View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14198_low_22 (Length: 217)
Name: NF14198_low_22
Description: NF14198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14198_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 44685205 - 44685006
Alignment:
| Q |
1 |
attcagagttgtttccgatggttaatgttaacaatgccaagctgtcaatagaagaagagagacgtgaaaatgttgatgaagagaatagacgtaaggagct |
100 |
Q |
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| T |
44685205 |
attcagagttgtttccgatggttaatgttaacaatgccaagctgtcaatagaagaagagagacgtgaaaatgttgatgaagagaatagacgtaaggacct |
44685106 |
T |
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| Q |
101 |
tgctatcaacgagtgcatgggcgaaaaagatgccaatttggatgcaataattgctcgctatgcggagactataaacaagtacaacttacgtaacttaggt |
200 |
Q |
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| T |
44685105 |
tcctatcaacgagtgcatgggcgaaaaagatgccaatttggatgcaataattgctcgctatgcggagactataaacaagtacaacttacgtaacttaggt |
44685006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 123 - 200
Target Start/End: Complemental strand, 44662669 - 44662592
Alignment:
| Q |
123 |
gaaaaagatgccaatttggatgcaataattgctcgctatgcggagactataaacaagtacaacttacgtaacttaggt |
200 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||| | |||||||||||| |
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| T |
44662669 |
gaaacagatgccaatttggatgcaataattgctcactatgctcagactataaccaagtacaacatgcgtaacttaggt |
44662592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 29339642 - 29339714
Alignment:
| Q |
129 |
gatgccaatttggatgcaataattgctcgctatgcggagactataaacaagtacaacttacgtaacttaggtg |
201 |
Q |
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| T |
29339642 |
gatgccaatttagatgcagtaattactcactatgtggagactataaacaagtacaacttgcgcaacttaggtg |
29339714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 129 - 200
Target Start/End: Original strand, 29352804 - 29352875
Alignment:
| Q |
129 |
gatgccaatttggatgcaataattgctcgctatgcggagactataaacaagtacaacttacgtaacttaggt |
200 |
Q |
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||||||||||| |||||| ||||||||| ||||| ||||||||||||||| |||||||| ||||||||||| |
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| T |
29352804 |
gatgccaatttagatgcagtaattgctcactatgtggagactataaacaaatacaacttgtgtaacttaggt |
29352875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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