View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14198_low_3 (Length: 608)
Name: NF14198_low_3
Description: NF14198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14198_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 120 - 595
Target Start/End: Original strand, 11437198 - 11437673
Alignment:
| Q |
120 |
ttcagtggtctttctagcatgccaaatgacgaatcaaaatacctaccaacataaagtgaagnnnnnnnnggttgtatagaacatgctaattgtacatatg |
219 |
Q |
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| T |
11437198 |
ttcagtggtctttctaccatgccaaatgactaatcaaaatacctaccaacataaagtgaagaaaaaaaaggttgtatagaacatgctaa--gtacatatg |
11437295 |
T |
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| Q |
220 |
aacacgaatttgaacattcagtgataatctctnnnnnnnnnnnnnntcagtcataactcacatggaactattcattcacgtcttaagcatatttattaag |
319 |
Q |
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| T |
11437296 |
aacacgaatttgaacattcagtgataatctctaaaaaatgaaaaaatcagtcataactcacatggaactattcattcacgtcttaagcatatttattaag |
11437395 |
T |
|
| Q |
320 |
gcactaaacaaaaaagtaaagaaaagacatggttaatattgaagaagcctcattgaacaaaaggaatagaacagtgtcccaaagaggaatacgaatcata |
419 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11437396 |
gcactaaacaaaaaagtaaagaaaagacatggttcatattgaagaagcctcattgaacaaaaggaacagaacagtgtcccaaagaggaatacgaatcata |
11437495 |
T |
|
| Q |
420 |
tgaagattttctaacttacaatcagaaacaatgaagttgctgccattgtagctggtattgctactg----atgtaaccttatcgaatggctctttcaggt |
515 |
Q |
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| T |
11437496 |
tgaagattttctaacttacaatcagaaacaatgaagttgctgccattgtagctggtattgctactgatcaatgtaaccttatcgaatggctctttcaggt |
11437595 |
T |
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| Q |
516 |
acatttgtttcgggatatgccatgggagatgataggagacgagagagagaggccatgatacgagatgggttcattttgat |
595 |
Q |
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| T |
11437596 |
acatttgtttcgggatatgccatgggagatgataggagac--gagagagaggccatgatacgagatgggttcattttgat |
11437673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 11437013 - 11437098
Alignment:
| Q |
17 |
catagggtggaaaaagtaatagtttaaacttaatgtagcataaagcatctcctattgcataatctagtttgcctccaaaaacatca |
102 |
Q |
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| T |
11437013 |
catagggtggaaaaagtaatagtctaaacttaatgtagcataaagcatctcctattgcataatctagtttgcctccaaaaacatca |
11437098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 8e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 420 - 535
Target Start/End: Original strand, 36095064 - 36095179
Alignment:
| Q |
420 |
tgaagattttctaacttacaatcagaaacaatgaagttgctgccattgtagctggtattgctactgatgtaaccttatcgaatggctctttcaggtacat |
519 |
Q |
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| T |
36095064 |
tgaagattttctaacttacaatcagaaacaatgaagttgctgccaaagcagctggtattgctactgatgtaaccctatcaaatggccctttcaagtatgt |
36095163 |
T |
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| Q |
520 |
ttgtttcgggatatgc |
535 |
Q |
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| T |
36095164 |
gtgtttcgggatatgc |
36095179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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