View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14198_low_4 (Length: 562)

Name: NF14198_low_4
Description: NF14198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14198_low_4
NF14198_low_4
[»] chr4 (24 HSPs)
chr4 (267-427)||(1587298-1587460)
chr4 (80-161)||(4129148-4129229)
chr4 (256-357)||(1829858-1829961)
chr4 (287-342)||(23203877-23203932)
chr4 (283-372)||(6348288-6348377)
chr4 (283-342)||(2311087-2311146)
chr4 (287-342)||(7708712-7708767)
chr4 (283-337)||(393566-393620)
chr4 (283-371)||(53435648-53435735)
chr4 (283-342)||(40792882-40792941)
chr4 (215-255)||(1794409-1794450)
chr4 (283-364)||(53205384-53205465)
chr4 (284-364)||(1794548-1794628)
chr4 (215-257)||(44503753-44503796)
chr4 (214-255)||(4128990-4129032)
chr4 (214-255)||(24426336-24426378)
chr4 (214-255)||(37882831-37882873)
chr4 (283-341)||(52963702-52963760)
chr4 (219-255)||(6349630-6349667)
chr4 (284-357)||(27850845-27850918)
chr4 (265-335)||(44498576-44498647)
chr4 (283-364)||(53432196-53432277)
chr4 (283-363)||(4714154-4714234)
chr4 (106-150)||(23966943-23966987)
[»] chr7 (24 HSPs)
chr7 (287-447)||(47456198-47456361)
chr7 (287-404)||(6173315-6173430)
chr7 (283-378)||(47454470-47454568)
chr7 (283-342)||(43459588-43459647)
chr7 (287-340)||(41079761-41079814)
chr7 (283-342)||(11501313-11501372)
chr7 (256-358)||(32256304-32256406)
chr7 (283-342)||(22337295-22337354)
chr7 (101-150)||(8094389-8094438)
chr7 (283-366)||(669288-669370)
chr7 (283-358)||(24282883-24282958)
chr7 (213-255)||(40811336-40811379)
chr7 (290-337)||(40812542-40812589)
chr7 (283-342)||(44554691-44554749)
chr7 (213-255)||(47456452-47456495)
chr7 (214-255)||(6173527-6173569)
chr7 (283-333)||(7354638-7354688)
chr7 (304-358)||(22691124-22691178)
chr7 (287-340)||(22538774-22538827)
chr7 (215-255)||(32256472-32256513)
chr7 (214-257)||(32602930-32602974)
chr7 (214-253)||(33096866-33096906)
chr7 (208-255)||(40508369-40508417)
chr7 (283-335)||(41328353-41328405)
[»] chr5 (11 HSPs)
chr5 (256-427)||(324144-324324)
chr5 (283-377)||(325073-325168)
chr5 (287-342)||(30912086-30912141)
chr5 (217-255)||(27705393-27705432)
chr5 (210-255)||(325262-325308)
chr5 (283-337)||(30857933-30857987)
chr5 (283-364)||(1102752-1102833)
chr5 (284-357)||(27705223-27705296)
chr5 (101-150)||(37968960-37969009)
chr5 (212-255)||(30859249-30859293)
chr5 (283-342)||(39605392-39605452)
[»] chr1 (19 HSPs)
chr1 (287-447)||(46111310-46111474)
chr1 (256-354)||(27814397-27814497)
chr1 (287-378)||(46110419-46110512)
chr1 (283-342)||(16963967-16964026)
chr1 (283-340)||(49802821-49802878)
chr1 (286-358)||(50444606-50444677)
chr1 (268-342)||(48492846-48492921)
chr1 (283-335)||(9226145-9226197)
chr1 (214-257)||(46111563-46111607)
chr1 (283-335)||(51445724-51445776)
chr1 (283-358)||(41873878-41873953)
chr1 (209-255)||(45585086-45585133)
chr1 (213-255)||(52627511-52627554)
chr1 (304-366)||(12665945-12666007)
chr1 (214-255)||(15072867-15072909)
chr1 (283-317)||(23091486-23091520)
chr1 (284-357)||(15232888-15232961)
chr1 (215-255)||(50444775-50444816)
chr1 (292-337)||(51300188-51300233)
[»] chr8 (15 HSPs)
chr8 (283-427)||(30787440-30787583)
chr8 (283-358)||(30786811-30786886)
chr8 (283-342)||(42100030-42100089)
chr8 (283-342)||(32797274-32797333)
chr8 (256-358)||(32693935-32694038)
chr8 (286-342)||(41629844-41629900)
chr8 (213-255)||(30786672-30786715)
chr8 (283-342)||(45279813-45279872)
chr8 (283-333)||(8571548-8571598)
chr8 (214-255)||(32695352-32695394)
chr8 (284-358)||(32798438-32798512)
chr8 (214-255)||(32798609-32798651)
chr8 (212-257)||(44076438-44076484)
chr8 (283-335)||(9854809-9854861)
chr8 (293-357)||(13117540-13117604)
[»] chr6 (7 HSPs)
chr6 (283-342)||(29380324-29380383)
chr6 (283-342)||(23397278-23397337)
chr6 (290-342)||(17839063-17839115)
chr6 (282-312)||(2352614-2352644)
chr6 (104-150)||(4080999-4081045)
chr6 (203-255)||(34023872-34023925)
chr6 (211-255)||(34024141-34024185)
[»] chr3 (16 HSPs)
chr3 (283-342)||(27838052-27838111)
chr3 (283-342)||(35372083-35372142)
chr3 (256-358)||(3209874-3209978)
chr3 (285-342)||(40244321-40244378)
chr3 (283-358)||(34818219-34818294)
chr3 (283-342)||(40745390-40745449)
chr3 (287-342)||(41263775-41263830)
chr3 (283-342)||(10731018-10731077)
chr3 (283-342)||(38241039-38241097)
chr3 (283-333)||(53420451-53420501)
chr3 (283-337)||(53613004-53613058)
chr3 (210-255)||(53624438-53624484)
chr3 (256-337)||(26887484-26887566)
chr3 (205-255)||(38242593-38242644)
chr3 (214-255)||(12105287-12105329)
chr3 (215-255)||(34818084-34818125)
[»] chr2 (12 HSPs)
chr2 (283-342)||(32470499-32470558)
chr2 (287-342)||(1083125-1083180)
chr2 (283-337)||(11316066-11316120)
chr2 (283-337)||(17460613-17460667)
chr2 (212-255)||(32469143-32469187)
chr2 (283-342)||(6028850-6028909)
chr2 (283-336)||(43034399-43034452)
chr2 (210-255)||(7437838-7437884)
chr2 (214-255)||(28562886-28562928)
chr2 (212-257)||(42641935-42641981)
chr2 (218-255)||(43034548-43034586)
chr2 (215-255)||(11317445-11317486)
[»] scaffold0034 (2 HSPs)
scaffold0034 (283-358)||(109653-109728)
scaffold0034 (214-255)||(109822-109864)
[»] scaffold1152 (1 HSPs)
scaffold1152 (290-337)||(2404-2451)
[»] scaffold0077 (1 HSPs)
scaffold0077 (283-342)||(52725-52784)
[»] scaffold0031 (1 HSPs)
scaffold0031 (215-255)||(123967-124008)


Alignment Details
Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 267 - 427
Target Start/End: Original strand, 1587298 - 1587460
Alignment:
Q  267 ggttaacttttaactt--aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaaccttaaccgtttgatcattttt 364  Q
    |||||||||||||||   ||||||||| || || |||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||| |||||    
T  1587298 ggttaacttttaactctaaatgtctatagtagaccaactttaaaagtgttccatcgtataccttattaattttgttaatcttaaccgtttgatctttttt 1587397  T
Q  365 aaagaaagtggaccctttgatatttttcaaattctaccttcatcttcttcctatcattttcat 427  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  1587398 aaagaaagtggaccctttgatctttttcaatttctaccttcatcttcttcctatcattttcat 1587460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 4129229 - 4129148
Alignment:
Q  80 gtgtttaacatataatatcacgagcttatctactggcataagtacttgtgacaccatttgagagattttattaaatgttcat 161  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  4129229 gtgttcaacatataatatcacgagcttatctactggcataagtacttgtgacactatttgggagattttattaaatgttcat 4129148  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 256 - 357
Target Start/End: Original strand, 1829858 - 1829961
Alignment:
Q  256 taaattccaacggttaacttttaactt--aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaaccttaaccgtt 353  Q
    |||||||| || ||||||||||||||   ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||    
T  1829858 taaattccgactgttaacttttaactctaaatgtctatcgtggaccaactttaaaagtggtccatcgtagaccttattaattttattaatcttaaccatt 1829957  T
Q  354 tgat 357  Q
    ||||    
T  1829958 tgat 1829961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 287 - 342
Target Start/End: Complemental strand, 23203932 - 23203877
Alignment:
Q  287 tctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaa 342  Q
    |||||||||||||||| |||||||||||| || |||||||||||||||||||||||    
T  23203932 tctatggtggatcaaccttaaaagtggtctattgtagaccttattaattttgttaa 23203877  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 283 - 372
Target Start/End: Original strand, 6348288 - 6348377
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaaccttaaccgtttgatcatttttaaagaaag 372  Q
    ||||||||||||||| |||| |||| ||||||||| |||||||||||||||| ||  |||  |||||| ||||||| ||||| |||||||    
T  6348288 aatgtctatggtggaccaaccttaagagtggtccaccgtagaccttattaatatttctaattttaaccctttgatctttttttaagaaag 6348377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 342
Target Start/End: Original strand, 2311087 - 2311146
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaa 342  Q
    ||||||||||||||| |||  |||||||||||| |||||||||||||||||| |||||||    
T  2311087 aatgtctatggtggaccaatcttaaaagtggtctatcgtagaccttattaatattgttaa 2311146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 342
Target Start/End: Complemental strand, 7708767 - 7708712
Alignment:
Q  287 tctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaa 342  Q
    ||||||||||| |||| ||||||||||| |||| ||||||||||||||||||||||    
T  7708767 tctatggtggaccaaccttaaaagtggtacatcatagaccttattaattttgttaa 7708712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 283 - 337
Target Start/End: Complemental strand, 393620 - 393566
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaatttt 337  Q
    ||||| ||| ||||| |||| ||||||||||||||||||||||||||||||||||    
T  393620 aatgtttatagtggaccaaccttaaaagtggtccatcgtagaccttattaatttt 393566  T

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Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 371
Target Start/End: Complemental strand, 53435735 - 53435648
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaaccttaaccgtttgatcatttttaaagaaa 371  Q
    |||||||||||| || |||| |||| ||||||||| ||||||| | ||||||||| | ||  |||||||||||||| ||||||||||||    
T  53435735 aatgtctatggtagaccaaccttaagagtggtccaccgtagacttcattaattttttaaattttaaccgtttgatc-tttttaaagaaa 53435648  T

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Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 283 - 342
Target Start/End: Original strand, 40792882 - 40792941
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaa 342  Q
    ||||||||| ||||| |||| |||||||||||| || |||||||||||||||||| ||||    
T  40792882 aatgtctatagtggaccaaccttaaaagtggtctatggtagaccttattaattttcttaa 40792941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 1794409 - 1794450
Alignment:
Q  215 ggcttatttgattcaatggt-cctcaaataatttcaagtttt 255  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  1794409 ggcttatttgattcaatggtccctcaaataatttcaagtttt 1794450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 283 - 364
Target Start/End: Complemental strand, 53205465 - 53205384
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaaccttaaccgtttgatcattttt 364  Q
    |||||||||||||||||||| ||| |  ||||||  ||||||| |||| |||||||||||  |||||| ||||||| |||||    
T  53205465 aatgtctatggtggatcaacattatagatggtccgccgtagactttatcaattttgttaattttaaccctttgatctttttt 53205384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 364
Target Start/End: Original strand, 1794548 - 1794628
Alignment:
Q  284 atgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaaccttaaccgtttgatcattttt 364  Q
    |||| ||||||||| |||| |||| ||||||||| | ||||||||||||| ||| ||||  | ||||||||||||| ||||    
T  1794548 atgtatatggtggaccaaccttaagagtggtccaccatagaccttattaaattttttaatttaaaccgtttgatcaatttt 1794628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 44503796 - 44503753
Alignment:
Q  215 ggcttatttgattcaatggtcc-tcaaataatttcaagttttta 257  Q
    ||||||||||||||||| |||| |||||||||||||||||||||    
T  44503796 ggcttatttgattcaatagtccctcaaataatttcaagttttta 44503753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 4128990 - 4129032
Alignment:
Q  214 aggcttatttgattcaatggt-cctcaaataatttcaagtttt 255  Q
    ||||||||||||| ||||||| |||||||||||||||||||||    
T  4128990 aggcttatttgatccaatggttcctcaaataatttcaagtttt 4129032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 24426336 - 24426378
Alignment:
Q  214 aggcttatttgattcaatggtcc-tcaaataatttcaagtttt 255  Q
    ||||||||||||| ||||||||| |||||||||||||||||||    
T  24426336 aggcttatttgatccaatggtccctcaaataatttcaagtttt 24426378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 37882831 - 37882873
Alignment:
Q  214 aggcttatttgattcaatggtcc-tcaaataatttcaagtttt 255  Q
    |||||||||||||| |||||||| |||||||||||||||||||    
T  37882831 aggcttatttgatttaatggtccctcaaataatttcaagtttt 37882873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 52963702 - 52963760
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgtta 341  Q
    ||||||||||||||| || | |||||||||||||||| ||||||||  ||| |||||||    
T  52963702 aatgtctatggtggaccagccttaaaagtggtccatcatagaccttcataaatttgtta 52963760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 255
Target Start/End: Complemental strand, 6349667 - 6349630
Alignment:
Q  219 tatttgattcaatggtcc-tcaaataatttcaagtttt 255  Q
    |||||||||||||||||| |||||||||||||||||||    
T  6349667 tatttgattcaatggtccctcaaataatttcaagtttt 6349630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 357
Target Start/End: Complemental strand, 27850918 - 27850845
Alignment:
Q  284 atgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaaccttaaccgtttgat 357  Q
    |||||||||||||| |||| |||||||||||||| | |||| | |||||||| | ||||  | |||||||||||    
T  27850918 atgtctatggtggaccaaccttaaaagtggtccaccatagatcctattaattattttaatttaaaccgtttgat 27850845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 335
Target Start/End: Original strand, 44498576 - 44498647
Alignment:
Q  265 acggttaacttttaactt--aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaatt 335  Q
    |||||||||||| |||||  |||||||||||||||||||| |||| ||||||||| | |||| | ||||||||    
T  44498576 acggttaacttt-aactttaaatgtctatggtggatcaaccttaagagtggtccaccatagatcctattaatt 44498647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 364
Target Start/End: Original strand, 53432196 - 53432277
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaaccttaaccgtttgatcattttt 364  Q
    ||||||||||||| | ||||||||| |||||  || | || |||||||||||||| | ||  |||||||||||||| |||||    
T  53432196 aatgtctatggtgaaccaactttaagagtggctcaccatacaccttattaattttttcaattttaaccgtttgatctttttt 53432277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 283 - 363
Target Start/End: Original strand, 4714154 - 4714234
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaaccttaaccgtttgatcatttt 363  Q
    |||||||||||||||||||| |||| ||||||||| | ||||| | |||||| || | ||  |||||| ||||||| ||||    
T  4714154 aatgtctatggtggatcaaccttaagagtggtccaccatagacttcattaatattttaaattttaaccatttgatcttttt 4714234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 23966943 - 23966987
Alignment:
Q  106 tatctactggcataagtacttgtgacaccatttgagagattttat 150  Q
    ||||||||||||||||||||||||| ||  ||||||||| |||||    
T  23966943 tatctactggcataagtacttgtgaaactgtttgagagaatttat 23966987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 287 - 447
Target Start/End: Complemental strand, 47456361 - 47456198
Alignment:
Q  287 tctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaaccttaaccgtttga---tcatttttaaagaaagtggaccctttg 383  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||| | |||| |||||  ||||||   |  ||||||||||||||||||||||||    
T  47456361 tctatggtggaacaactttaaaagtggtccatcatagaccttattaattgtattaatcttaattgtttgatttttttttttaaagaaagtggaccctttg 47456262  T
Q  384 atatttttcaaattctaccttcatcttcttcctatcattttcattataatcgttgacattcatc 447  Q
    || |||||||| ||||||||||||||||||||||||||||||||  | ||||||||||||||||    
T  47456261 atctttttcaatttctaccttcatcttcttcctatcattttcatcttcatcgttgacattcatc 47456198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 287 - 404
Target Start/End: Complemental strand, 6173430 - 6173315
Alignment:
Q  287 tctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaaccttaaccgtttgatcatttttaaagaaagtggaccctttgata 386  Q
    ||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||  ||||||||||||||||||||||||||     
T  6173430 tctatagtggaccaactttaaaagtggtccatcgtagacctta-taattttgttaatcttaactgtttgat-ttttttaaagaaagtggaccctttgatc 6173333  T
Q  387 tttttcaaattctacctt 404  Q
    | |||||| |||||||||    
T  6173332 tatttcaatttctacctt 6173315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 283 - 378
Target Start/End: Original strand, 47454470 - 47454568
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaaccttaaccgtttga---tcatttttaaagaaagtggacc 378  Q
    |||||||||||| || |||| |||| ||||||||||||||||||||||||||||| ||||  ||||||||||||   |  |||||||||||||||||||    
T  47454470 aatgtctatggtagaccaaccttaagagtggtccatcgtagaccttattaattttattaattttaaccgtttgatttttttttttaaagaaagtggacc 47454568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 283 - 342
Target Start/End: Original strand, 43459588 - 43459647
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaa 342  Q
    |||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||    
T  43459588 aatgtctatggtggatcaaccttaaaaatggtacatcgtagaccttattaattttgttaa 43459647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 41079814 - 41079761
Alignment:
Q  287 tctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgtt 340  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  41079814 tctatggtggaacaacattaaaagtggtccatcgtagaccttattaattttgtt 41079761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 283 - 342
Target Start/End: Original strand, 11501313 - 11501372
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaa 342  Q
    ||||||||||||||| |||| ||||||||||| ||| |||||||||||||||||||||||    
T  11501313 aatgtctatggtggaccaaccttaaaagtggttcattgtagaccttattaattttgttaa 11501372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 256 - 358
Target Start/End: Complemental strand, 32256406 - 32256304
Alignment:
Q  256 taaattccaacggttaacttttaactt--aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaaccttaaccgtt 353  Q
    ||||||||||| ||||||||| |||||  ||||||||||||||| |||| ||||||||||||||| ||| |||||| | ||||||||||  |||||||||    
T  32256406 taaattccaaccgttaacttt-aacttcaaatgtctatggtggaccaacattaaaagtggtccattgtaaaccttaat-attttgttaattttaaccgtt 32256309  T
Q  354 tgatc 358  Q
     ||||    
T  32256308 cgatc 32256304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 283 - 342
Target Start/End: Complemental strand, 22337354 - 22337295
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaa 342  Q
    ||||||||||||||| |||| ||||| || || || ||||||||||||||||||||||||    
T  22337354 aatgtctatggtggaccaaccttaaatgtagtacaccgtagaccttattaattttgttaa 22337295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 8094438 - 8094389
Alignment:
Q  101 gagcttatctactggcataagtacttgtgacaccatttgagagattttat 150  Q
    ||||||||||||| ||||||| |||||||| || ||||||||||||||||    
T  8094438 gagcttatctactagcataagcacttgtgagactatttgagagattttat 8094389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 366
Target Start/End: Complemental strand, 669370 - 669288
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaaccttaaccgtttgatcatttttaa 366  Q
    ||||||||||||||| || ||| || ||||||||| | |||| | |||||||||||||||  | |||||||||||| |||||||    
T  669370 aatgtctatggtggaccatctt-aagagtggtccaccatagatcctattaattttgttaatttaaaccgtttgatcttttttaa 669288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 24282958 - 24282883
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaaccttaaccgtttgatc 358  Q
    |||||||||||||||||||| ||| |  |||||| ||||| || |||| |||||||||||  |||||| |||||||    
T  24282958 aatgtctatggtggatcaacattatagatggtccgtcgtaaactttatcaattttgttaattttaaccctttgatc 24282883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 40811336 - 40811379
Alignment:
Q  213 aaggcttatttgattcaatggtcc-tcaaataatttcaagtttt 255  Q
    |||||||||||||| ||||||||| |||||||||||||||||||    
T  40811336 aaggcttatttgatccaatggtccctcaaataatttcaagtttt 40811379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 337
Target Start/End: Complemental strand, 40812589 - 40812542
Alignment:
Q  290 atggtggatcaactttaaaagtggtccatcgtagaccttattaatttt 337  Q
    |||||||| |||| ||||||||| ||||||||||| ||||||||||||    
T  40812589 atggtggaccaaccttaaaagtgatccatcgtagatcttattaatttt 40812542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 342
Target Start/End: Complemental strand, 44554749 - 44554691
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaa 342  Q
    ||||||||||||||| |||| ||| || ||||||| |||||| |||||||||||||||||    
T  44554749 aatgtctatggtggaccaacattataa-tggtccaccgtagatcttattaattttgttaa 44554691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 47456495 - 47456452
Alignment:
Q  213 aaggcttatttgattcaatggtcc-tcaaataatttcaagtttt 255  Q
    |||||||||||||| ||||||||| |||||||||||||||||||    
T  47456495 aaggcttatttgatccaatggtccctcaaataatttcaagtttt 47456452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 6173569 - 6173527
Alignment:
Q  214 aggcttatttgattcaatggtcc-tcaaataatttcaagtttt 255  Q
    ||||||||||||| ||||||||| |||||||||||||||||||    
T  6173569 aggcttatttgatccaatggtccctcaaataatttcaagtttt 6173527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 7354638 - 7354688
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaa 333  Q
    |||||||| | |||| |||| ||| ||||||||||||||||||||||||||    
T  7354638 aatgtctaagatggaccaacattataagtggtccatcgtagaccttattaa 7354688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 358
Target Start/End: Original strand, 22691124 - 22691178
Alignment:
Q  304 ttaaaagtggtccatcgtagaccttattaattttgttaaccttaaccgtttgatc 358  Q
    |||| |||||||||||||| ||||||| ||||||||| |  ||||||||||||||    
T  22691124 ttaagagtggtccatcgtataccttataaattttgtttattttaaccgtttgatc 22691178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 22538827 - 22538774
Alignment:
Q  287 tctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgtt 340  Q
    ||||||||| | |||| ||||||| |||| ||||||||||| ||||||||||||    
T  22538827 tctatggtgtaccaacattaaaagcggtctatcgtagacctcattaattttgtt 22538774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 32256513 - 32256472
Alignment:
Q  215 ggcttatttgattcaatggtcc-tcaaataatttcaagtttt 255  Q
    |||||||||||| ||||||||| |||||||||||||||||||    
T  32256513 ggcttatttgatccaatggtccctcaaataatttcaagtttt 32256472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 257
Target Start/End: Original strand, 32602930 - 32602974
Alignment:
Q  214 aggcttatttgattcaatggtcct-caaataatttcaagttttta 257  Q
    ||||||||||||| || ||||||| ||||||||||||||||||||    
T  32602930 aggcttatttgatccattggtccttcaaataatttcaagttttta 32602974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 253
Target Start/End: Original strand, 33096866 - 33096906
Alignment:
Q  214 aggcttatttgattcaatggt-cctcaaataatttcaagtt 253  Q
    ||||||||||||| ||||||| |||||||||||||||||||    
T  33096866 aggcttatttgatccaatggtccctcaaataatttcaagtt 33096906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 40508369 - 40508417
Alignment:
Q  208 ttataaaggcttatttgattcaatggtcctc-aaataatttcaagtttt 255  Q
    ||||||| ||||||||||| ||||||||| | |||||||||||||||||    
T  40508369 ttataaaagcttatttgatccaatggtcccctaaataatttcaagtttt 40508417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 283 - 335
Target Start/End: Original strand, 41328353 - 41328405
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaatt 335  Q
    ||||||||||||||| ||||||||||| ||||||| | |||| | ||||||||    
T  41328353 aatgtctatggtggaacaactttaaaaatggtccaccatagatcctattaatt 41328405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 5e-42; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 256 - 427
Target Start/End: Original strand, 324144 - 324324
Alignment:
Q  256 taaattccaacggttaacttttaactt--aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaaccttaaccgtt 353  Q
    ||||||||||| ||||||||||||||   ||||||||||||||| ||||||||| ||||||||||| |||||||||||||||  ||||| ||||||||||    
T  324144 taaattccaactgttaacttttaactctaaatgtctatggtggaccaactttaatagtggtccatcatagaccttattaattgcgttaatcttaaccgtt 324243  T
Q  354 tgatcattttt-------aaagaaagtggaccctttgatatttttcaaattctaccttcatcttcttcctatcattttcat 427  Q
    ||||  |||||       |||||||| | |||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  324244 tgattttttttaaaaaaaaaagaaagcgaaccctttgatctttttcaatttctaccttcatcttcttcctatcattttcat 324324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 283 - 377
Target Start/End: Complemental strand, 325168 - 325073
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaaccttaaccgtttgatc-atttttaaagaaagtggac 377  Q
    ||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||  ||||||||||||||  ||||||||||||||||||    
T  325168 aatgtctatggtggaccaaccttaatagtggtccatcgtagaccttattaattttgttaattttaaccgtttgatctttttttaaagaaagtggac 325073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 342
Target Start/End: Complemental strand, 30912141 - 30912086
Alignment:
Q  287 tctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaa 342  Q
    ||||||||||| |||| ||||||||||| |||| ||||||||||||||||||||||    
T  30912141 tctatggtggaccaaccttaaaagtggtacatcatagaccttattaattttgttaa 30912086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 255
Target Start/End: Complemental strand, 27705432 - 27705393
Alignment:
Q  217 cttatttgattcaatggt-cctcaaataatttcaagtttt 255  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  27705432 cttatttgattcaatggttcctcaaataatttcaagtttt 27705393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 325308 - 325262
Alignment:
Q  210 ataaaggcttatttgattcaatggtcc-tcaaataatttcaagtttt 255  Q
    |||||||||||||||||  |||||||| |||||||||||||||||||    
T  325308 ataaaggcttatttgatctaatggtccctcaaataatttcaagtttt 325262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 283 - 337
Target Start/End: Original strand, 30857933 - 30857987
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaatttt 337  Q
    |||||||||| |||| |||| |||||||||||| |||  ||||||||||||||||    
T  30857933 aatgtctatgatggaccaaccttaaaagtggtctatcagagaccttattaatttt 30857987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 364
Target Start/End: Original strand, 1102752 - 1102833
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaaccttaaccgtttgatcattttt 364  Q
    |||||||||||| || |||| |||| ||||||||| | |||| |||||||||| | ||||  | |||||||||||| |||||    
T  1102752 aatgtctatggtagaccaaccttaagagtggtccaccatagatcttattaattattttaatttaaaccgtttgatctttttt 1102833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 357
Target Start/End: Complemental strand, 27705296 - 27705223
Alignment:
Q  284 atgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaaccttaaccgtttgat 357  Q
    |||||||||||||| |||| |||||||||||||| | |||| | ||||||| || ||||  | |||||||||||    
T  27705296 atgtctatggtggaccaaccttaaaagtggtccaccatagatcctattaatatttttaatttaaaccgtttgat 27705223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 37969009 - 37968960
Alignment:
Q  101 gagcttatctactggcataagtacttgtgacaccatttgagagattttat 150  Q
    |||||||||||||| ||||||||||||||| ||  |||||||||| ||||    
T  37969009 gagcttatctactgacataagtacttgtgaaactgtttgagagatcttat 37968960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 30859293 - 30859249
Alignment:
Q  212 aaaggcttatttgattcaatggtcc-tcaaataatttcaagtttt 255  Q
    |||||||||||||||||| | |||| |||||||||||||||||||    
T  30859293 aaaggcttatttgattcattagtccctcaaataatttcaagtttt 30859249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 283 - 342
Target Start/End: Complemental strand, 39605452 - 39605392
Alignment:
Q  283 aatgtctatggtggatcaa-ctttaaaagtggtccatcgtagaccttattaattttgttaa 342  Q
    ||||| ||||||||| ||| ||| |||||||||| || |||||||||||||||||| ||||    
T  39605452 aatgtatatggtggaccaatcttaaaaagtggtctatggtagaccttattaattttcttaa 39605392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 5e-42; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 287 - 447
Target Start/End: Complemental strand, 46111474 - 46111310
Alignment:
Q  287 tctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaaccttaaccgtttgatcattttt----aaagaaagtggacccttt 382  Q
    ||||||||||||||||||||||||||||||||  |||| |||||||||| |||||| |||||| |||||||  |||||    |||||||||||| |||||    
T  46111474 tctatggtggatcaactttaaaagtggtccatgatagatcttattaattgtgttaatcttaactgtttgatttttttttttaaaagaaagtggatccttt 46111375  T
Q  383 gatatttttcaaattctaccttcatcttcttcctatcattttcattataatcgttgacattcatc 447  Q
    ||| |||||||| ||||||||||||||||||||||||||||||||  | |||| |||||||||||    
T  46111374 gatctttttcaatttctaccttcatcttcttcctatcattttcatcttcatcgctgacattcatc 46111310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 256 - 354
Target Start/End: Original strand, 27814397 - 27814497
Alignment:
Q  256 taaattccaacggttaacttttaactt--aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaaccttaaccgtt 353  Q
    ||||| || |||||||||||||||||   ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||  |||||||||    
T  27814397 taaatcccgacggttaacttttaactctaaatgtctatggtggaccaactttaaaagtggtccatcgtaaaccttattaattttgttaattttaaccgtt 27814496  T
Q  354 t 354  Q
    |    
T  27814497 t 27814497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 287 - 378
Target Start/End: Original strand, 46110419 - 46110512
Alignment:
Q  287 tctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaaccttaaccgtttgatc--atttttaaagaaagtggacc 378  Q
    ||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||  ||||||||||||||   |||||||||||||||||||    
T  46110419 tctatggtggaccaaccttaagagtggtccatcgtagaccttattaattttgttaattttaaccgtttgatcttttttttaaagaaagtggacc 46110512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 342
Target Start/End: Original strand, 16963967 - 16964026
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaa 342  Q
    ||||| |||| |||| |||| |||||||||||||||| ||||||||||||||||||||||    
T  16963967 aatgtttatgatggaccaaccttaaaagtggtccatcatagaccttattaattttgttaa 16964026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 340
Target Start/End: Complemental strand, 49802878 - 49802821
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgtt 340  Q
    ||||||||||||| | |||| |||||||||||| ||||||||||| ||||||||||||    
T  49802878 aatgtctatggtgtaccaaccttaaaagtggtctatcgtagacctcattaattttgtt 49802821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 358
Target Start/End: Complemental strand, 50444677 - 50444606
Alignment:
Q  286 gtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaaccttaaccgtttgatc 358  Q
    ||||||| |||| |||| |||| |||| ||||||||||||||||||||||||||| |  ||||||||||||||    
T  50444677 gtctatgttggaccaaccttaagagtg-tccatcgtagaccttattaattttgttcattttaaccgtttgatc 50444606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 268 - 342
Target Start/End: Original strand, 48492846 - 48492921
Alignment:
Q  268 gttaacttttaactt--aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaa 342  Q
    ||||||||||||||   ||||||||||||||| |||| ||| || ||||||| |||||| |||||||||||||||||    
T  48492846 gttaacttttaactccaaatgtctatggtggaccaacattataa-tggtccaccgtagatcttattaattttgttaa 48492921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 9226197 - 9226145
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaatt 335  Q
    |||||||||||||||||||| |||||||||||||| | |||| | ||||||||    
T  9226197 aatgtctatggtggatcaaccttaaaagtggtccaccatagatcctattaatt 9226145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 46111607 - 46111563
Alignment:
Q  214 aggcttatttgattcaatggt-cctcaaataatttcaagttttta 257  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||    
T  46111607 aggcttatttgattcaatggtcccttaaataatttcaagttttta 46111563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 335
Target Start/End: Original strand, 51445724 - 51445776
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaatt 335  Q
    ||||||||||||||||||||||||||| ||||||| | |||| | ||||||||    
T  51445724 aatgtctatggtggatcaactttaaaaatggtccaccatagatcctattaatt 51445776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 41873953 - 41873878
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaaccttaaccgtttgatc 358  Q
    ||||||||||||||| |||| |||| ||||||||| | ||||| | ||||||||| | ||  ||||||||||||||    
T  41873953 aatgtctatggtggaccaaccttaagagtggtccaccatagacttcattaattttttaaattttaaccgtttgatc 41873878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 45585133 - 45585086
Alignment:
Q  209 tataaaggcttatttgattcaatggtcc-tcaaataatttcaagtttt 255  Q
    |||||||||||||||||| |||| |||| |||||||||||||||||||    
T  45585133 tataaaggcttatttgatccaatagtccctcaaataatttcaagtttt 45585086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 52627511 - 52627554
Alignment:
Q  213 aaggcttatttgattcaatggtcc-tcaaataatttcaagtttt 255  Q
    |||||||||||||| ||||||||| |||||||||||||||||||    
T  52627511 aaggcttatttgatccaatggtccctcaaataatttcaagtttt 52627554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 366
Target Start/End: Original strand, 12665945 - 12666007
Alignment:
Q  304 ttaaaagtggtccatcgtagaccttattaattttgttaaccttaaccgtttgatcatttttaa 366  Q
    |||| ||||||||| | |||| |||||||||||||||||  | |||||||||||| |||||||    
T  12665945 ttaagagtggtccaccatagatcttattaattttgttaatttaaaccgtttgatcttttttaa 12666007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 15072909 - 15072867
Alignment:
Q  214 aggcttatttgattcaatggtcctc-aaataatttcaagtttt 255  Q
    ||||||||||||||||||||||||| || ||||||||||||||    
T  15072909 aggcttatttgattcaatggtcctctaattaatttcaagtttt 15072867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 283 - 317
Target Start/End: Original strand, 23091486 - 23091520
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtcca 317  Q
    ||||||||||||||| |||||||||||||||||||    
T  23091486 aatgtctatggtggaccaactttaaaagtggtcca 23091520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 357
Target Start/End: Original strand, 15232888 - 15232961
Alignment:
Q  284 atgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaaccttaaccgtttgat 357  Q
    |||| ||| ||||| ||||||||||||||||||||| |||| | |||||||| | ||||  | |||||||||||    
T  15232888 atgtatatagtggaccaactttaaaagtggtccatcatagatcctattaattattttaatatcaaccgtttgat 15232961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 50444816 - 50444775
Alignment:
Q  215 ggcttatttgattcaatggt-cctcaaataatttcaagtttt 255  Q
    |||||||||||||||||||| |||||||||||||||| ||||    
T  50444816 ggcttatttgattcaatggtccctcaaataatttcaaatttt 50444775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 337
Target Start/End: Complemental strand, 51300233 - 51300188
Alignment:
Q  292 ggtggatcaactttaaaagtggtccatcgtagaccttattaatttt 337  Q
    |||||| |||| |||||||||||||| | |||||||||||||||||    
T  51300233 ggtggaccaacattaaaagtggtccaccatagaccttattaatttt 51300188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 7e-29; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 283 - 427
Target Start/End: Complemental strand, 30787583 - 30787440
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtaga-ccttattaattttgttaaccttaaccgtttgatcatttttaaagaaagtggaccctt 381  Q
    ||||| ||| ||||| ||||||||||| |||| ||||||||| |||||  ||||||||||| ||||||| ||||||  ||||||||||||||||||||||    
T  30787583 aatgtttatagtggaccaactttaaaaatggttcatcgtagaaccttag-aattttgttaatcttaaccatttgatt-tttttaaagaaagtggaccctt 30787486  T
Q  382 tgatatttttcaaattctaccttcatcttcttcctatcattttcat 427  Q
    |||| |||||||| ||||||||||||| |||||||  |||||||||    
T  30787485 tgatctttttcaatttctaccttcatcatcttcctcacattttcat 30787440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 283 - 358
Target Start/End: Original strand, 30786811 - 30786886
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaaccttaaccgtttgatc 358  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||  ||||||||||||||    
T  30786811 aatgtctatggtggatcaactttaaaagtggtccatcataaaccttattaattttgttaattttaaccgtttgatc 30786886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 283 - 342
Target Start/End: Complemental strand, 42100089 - 42100030
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaa 342  Q
    ||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  42100089 aatgtctttggtggaccaaccttaaaagtggtccatcgtagaccttattaattttgttaa 42100030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 283 - 342
Target Start/End: Original strand, 32797274 - 32797333
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaa 342  Q
    |||||||||| ||||||||| |||||| |||| |||||||||||||||||||||||||||    
T  32797274 aatgtctatgatggatcaaccttaaaaatggttcatcgtagaccttattaattttgttaa 32797333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 358
Target Start/End: Original strand, 32693935 - 32694038
Alignment:
Q  256 taaattccaacggttaacttttaactt--aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaaccttaaccgtt 353  Q
    ||||| ||||| ||||||||| |||||  ||||| |||| |||| |||| |||||||||| | ||| ||||||||||||||||| ||||  |||||||||    
T  32693935 taaatcccaacagttaacttt-aactttaaatgtatatgatggaccaaccttaaaagtggcctatcatagaccttattaattttattaattttaaccgtt 32694033  T
Q  354 tgatc 358  Q
    |||||    
T  32694034 tgatc 32694038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 342
Target Start/End: Original strand, 41629844 - 41629900
Alignment:
Q  286 gtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaa 342  Q
    |||||||||| | |||| ||||||||||| ||||||| |||||||||||||||||||    
T  41629844 gtctatggtgaaccaaccttaaaagtggttcatcgtataccttattaattttgttaa 41629900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 30786672 - 30786715
Alignment:
Q  213 aaggcttatttgattcaatggtcc-tcaaataatttcaagtttt 255  Q
    |||||||||||||||||||||||| ||||||||||| |||||||    
T  30786672 aaggcttatttgattcaatggtccttcaaataattttaagtttt 30786715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 342
Target Start/End: Original strand, 45279813 - 45279872
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaa 342  Q
    ||||| ||||||||| ||   |||||||||||| ||||||||||||| ||||||||||||    
T  45279813 aatgtatatggtggaccagtcttaaaagtggtctatcgtagaccttaataattttgttaa 45279872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 283 - 333
Target Start/End: Complemental strand, 8571598 - 8571548
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaa 333  Q
    ||||||||||||||| ||||||||||| ||||||| | || ||||||||||    
T  8571598 aatgtctatggtggaccaactttaaaaatggtccaccatataccttattaa 8571548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 32695394 - 32695352
Alignment:
Q  214 aggcttatttgattcaatggtcc-tcaaataatttcaagtttt 255  Q
    |||||||||||||||| |||||| |||||||||||||||||||    
T  32695394 aggcttatttgattcattggtccctcaaataatttcaagtttt 32695352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 358
Target Start/End: Complemental strand, 32798512 - 32798438
Alignment:
Q  284 atgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaaccttaaccgtttgatc 358  Q
    ||||||||||||||||||| |||| ||||||||| | |||| | |||||||| | ||||  | ||||||||||||    
T  32798512 atgtctatggtggatcaaccttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttgatc 32798438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 32798651 - 32798609
Alignment:
Q  214 aggcttatttgattcaatggtcc-tcaaataatttcaagtttt 255  Q
    ||||||||||||| ||||||||| |||||||||||||||||||    
T  32798651 aggcttatttgatgcaatggtccctcaaataatttcaagtttt 32798609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 44076484 - 44076438
Alignment:
Q  212 aaaggcttatttgattcaatggt-cctcaaataatttcaagttttta 257  Q
    ||||||||||||||| ||||||| |||||||||||||||| ||||||    
T  44076484 aaaggcttatttgatccaatggtccctcaaataatttcaaattttta 44076438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 9854861 - 9854809
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaatt 335  Q
    ||||||||||||||| ||||||||| ||||||||| | |||| | ||||||||    
T  9854861 aatgtctatggtggaccaactttaagagtggtccaccatagatcctattaatt 9854809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 293 - 357
Target Start/End: Complemental strand, 13117604 - 13117540
Alignment:
Q  293 gtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaaccttaaccgtttgat 357  Q
    ||||| ||||||||||||||||||||| |||| | |||||||| | ||||  | |||||||||||    
T  13117604 gtggaccaactttaaaagtggtccatcatagatcctattaattattttaatatcaaccgtttgat 13117540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 283 - 342
Target Start/End: Original strand, 29380324 - 29380383
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaa 342  Q
    ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  29380324 aatgtatatggtggatcaaccttaaaagtagtccatcgtagaccttattaattttgttaa 29380383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 342
Target Start/End: Complemental strand, 23397337 - 23397278
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaa 342  Q
    ||||||||||||||| |||| |||||||| ||||| |||| |||||||||||||||||||    
T  23397337 aatgtctatggtggaccaaccttaaaagtagtccaccgtataccttattaattttgttaa 23397278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 17839115 - 17839063
Alignment:
Q  290 atggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaa 342  Q
    ||||||||| ||| |||||||| |||||| |||||||||||||||||||||||    
T  17839115 atggtggattaaccttaaaagtagtccattgtagaccttattaattttgttaa 17839063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 282 - 312
Target Start/End: Original strand, 2352614 - 2352644
Alignment:
Q  282 taatgtctatggtggatcaactttaaaagtg 312  Q
    |||||||||||||||||||||||||||||||    
T  2352614 taatgtctatggtggatcaactttaaaagtg 2352644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 4081045 - 4080999
Alignment:
Q  104 cttatctactggcataagtacttgtgacaccatttgagagattttat 150  Q
    ||||||||||| ||||||| |||||| ||| ||||||||||||||||    
T  4081045 cttatctactgacataagtgcttgtggcactatttgagagattttat 4080999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 34023872 - 34023925
Alignment:
Q  203 ttatattataaaggcttatttgattcaatggt-cctcaaataatttcaagtttt 255  Q
    ||||||||| ||||||||||||||  |||||| ||||||||||||| |||||||    
T  34023872 ttatattattaaggcttatttgatcaaatggtccctcaaataattttaagtttt 34023925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 34024185 - 34024141
Alignment:
Q  211 taaaggcttatttgattcaatggtcctcaaataatttcaagtttt 255  Q
    |||||||||||||||| ||||| | ||||||||||||||| ||||    
T  34024185 taaaggcttatttgatccaatgattctcaaataatttcaaatttt 34024141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 283 - 342
Target Start/End: Original strand, 27838052 - 27838111
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaa 342  Q
    |||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||    
T  27838052 aatgtctatggtagaccaattttaaaagtggtccatcgtagaccttattaattttgttaa 27838111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 283 - 342
Target Start/End: Complemental strand, 35372142 - 35372083
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaa 342  Q
    |||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  35372142 aatgtctatgttggaccaattttaaaagtggtccatcgtagaccttattaattttgttaa 35372083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 256 - 358
Target Start/End: Complemental strand, 3209978 - 3209874
Alignment:
Q  256 taaattccaacggttaacttttaactt--aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaaccttaaccgtt 353  Q
    ||||| |||||  ||||||||||||||  ||||| ||||||||| |||| |||||| | |||||||||| |||||||||||||||||||  |||||| ||    
T  3209978 taaatcccaactattaacttttaacttcaaatgtatatggtggaccaaccttaaaaatagtccatcgtaaaccttattaattttgttaattttaaccatt 3209879  T
Q  354 tgatc 358  Q
    |||||    
T  3209878 tgatc 3209874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 285 - 342
Target Start/End: Original strand, 40244321 - 40244378
Alignment:
Q  285 tgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaa 342  Q
    ||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||    
T  40244321 tgtctatggtggaccaaacttaaaagtggtccatcgtagaccttattaattttgttaa 40244378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 358
Target Start/End: Original strand, 34818219 - 34818294
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaaccttaaccgtttgatc 358  Q
    |||||||||||| ||||||| |||||| || || ||| ||||||||||||||||||||||  ||||||||| ||||    
T  34818219 aatgtctatggttgatcaaccttaaaaatgatctatcatagaccttattaattttgttaattttaaccgttcgatc 34818294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 342
Target Start/End: Complemental strand, 40745449 - 40745390
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaa 342  Q
    ||||| |||| || |||||| ||||||||||| |||||||||||||||||||||||||||    
T  40745449 aatgtttatgatgtatcaaccttaaaagtggttcatcgtagaccttattaattttgttaa 40745390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 342
Target Start/End: Original strand, 41263775 - 41263830
Alignment:
Q  287 tctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaa 342  Q
    |||||||||||||||| |||||||||||| ||  ||||||||||||||||||||||    
T  41263775 tctatggtggatcaaccttaaaagtggtctattctagaccttattaattttgttaa 41263830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 283 - 342
Target Start/End: Original strand, 10731018 - 10731077
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaa 342  Q
    ||||||||||||| | |||| |||||||||||| ||| || |||||||||||||||||||    
T  10731018 aatgtctatggtgaaccaaccttaaaagtggtctatcatataccttattaattttgttaa 10731077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 283 - 342
Target Start/End: Original strand, 38241039 - 38241097
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaa 342  Q
    ||||||||||||| | |||||| |||| |||||||||||||| |||||||||||||||||    
T  38241039 aatgtctatggtgaaccaacttaaaaa-tggtccatcgtagagcttattaattttgttaa 38241097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 53420451 - 53420501
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaa 333  Q
    ||||||||||||||| |||||||||||||| |||| | |||||||||||||    
T  53420451 aatgtctatggtggaccaactttaaaagtgatccaccatagaccttattaa 53420501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 337
Target Start/End: Original strand, 53613004 - 53613058
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaatttt 337  Q
    |||||||||| || | |||||||||||||||| ||| ||||||||||||||||||    
T  53613004 aatgtctatgatgaaccaactttaaaagtggttcattgtagaccttattaatttt 53613058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 53624484 - 53624438
Alignment:
Q  210 ataaaggcttatttgattcaatggt-cctcaaataatttcaagtttt 255  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||    
T  53624484 ataaaggcttatttgatccaatggtccctcaaataatttcaagtttt 53624438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 337
Target Start/End: Complemental strand, 26887566 - 26887484
Alignment:
Q  256 taaattccaacggttaacttttaactt--aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaatttt 337  Q
    |||||||  |||||||||||| |||||  ||| ||||||||| | |||| |||||||||||| ||||||||||| |||||||||    
T  26887566 taaattctgacggttaacttt-aacttcaaatatctatggtgtaccaaccttaaaagtggtctatcgtagacctcattaatttt 26887484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 38242644 - 38242593
Alignment:
Q  205 atattataaaggcttatttgattcaatggtcc-tcaaataatttcaagtttt 255  Q
    |||||||  ||||||||||||||||| ||||| |||||||||||||||||||    
T  38242644 atattatttaggcttatttgattcaaaggtccctcaaataatttcaagtttt 38242593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 12105287 - 12105329
Alignment:
Q  214 aggcttatttgattcaatggt-cctcaaataatttcaagtttt 255  Q
    |||||||||| |||||||||| |||||||||||||||||||||    
T  12105287 aggcttatttaattcaatggttcctcaaataatttcaagtttt 12105329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 34818084 - 34818125
Alignment:
Q  215 ggcttatttgattcaatggtcctc-aaataatttcaagtttt 255  Q
    |||||||||||||||||||||||| || ||||||||||||||    
T  34818084 ggcttatttgattcaatggtcctctaattaatttcaagtttt 34818125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 283 - 342
Target Start/End: Complemental strand, 32470558 - 32470499
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaa 342  Q
    |||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||    
T  32470558 aatgtctatggtggataaaccttaaaaatggtccatcgtagaccttattaattttgttaa 32470499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 287 - 342
Target Start/End: Original strand, 1083125 - 1083180
Alignment:
Q  287 tctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaa 342  Q
    |||||||||||||||| |||||||||||| || |||||||||||||||||||||||    
T  1083125 tctatggtggatcaaccttaaaagtggtctattgtagaccttattaattttgttaa 1083180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 337
Target Start/End: Original strand, 11316066 - 11316120
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaatttt 337  Q
    |||||||||||||||||||| |||||| ||||||| |||||||||||||||||||    
T  11316066 aatgtctatggtggatcaaccttaaaaatggtccaccgtagaccttattaatttt 11316120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 283 - 337
Target Start/End: Complemental strand, 17460667 - 17460613
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaatttt 337  Q
    ||||||||||||||| |||  |||||||||||| |||||||||||||||||||||    
T  17460667 aatgtctatggtggaccaatcttaaaagtggtctatcgtagaccttattaatttt 17460613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 32469143 - 32469187
Alignment:
Q  212 aaaggcttatttgattcaatggt-cctcaaataatttcaagtttt 255  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  32469143 aaaggcttatttgattcaatggtccctcaaataatttcaagtttt 32469187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 283 - 342
Target Start/End: Original strand, 6028850 - 6028909
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaa 342  Q
    ||||| ||||||||| ||   |||||||||||||||||||||||||| ||||||||||||    
T  6028850 aatgtatatggtggaccagtcttaaaagtggtccatcgtagaccttaataattttgttaa 6028909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 283 - 336
Target Start/End: Complemental strand, 43034452 - 43034399
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattt 336  Q
    ||||||||||||||||||||||||| ||||||||| | |||| | |||||||||    
T  43034452 aatgtctatggtggatcaactttaagagtggtccaccatagatcctattaattt 43034399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 7437884 - 7437838
Alignment:
Q  210 ataaaggcttatttgattcaatgg-tcctcaaataatttcaagtttt 255  Q
    ||||||||||||||||| |||||| | ||||||||||||||||||||    
T  7437884 ataaaggcttatttgatccaatggttgctcaaataatttcaagtttt 7437838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 28562928 - 28562886
Alignment:
Q  214 aggcttatttgattcaatggt-cctcaaataatttcaagtttt 255  Q
    ||||||||||||||||||||| |||||||||||||||| ||||    
T  28562928 aggcttatttgattcaatggtccctcaaataatttcaaatttt 28562886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 42641981 - 42641935
Alignment:
Q  212 aaaggcttatttgattcaatggt-cctcaaataatttcaagttttta 257  Q
    ||||| ||||||||||||||||| |||||||||||||||| ||||||    
T  42641981 aaaggtttatttgattcaatggtccctcaaataatttcaaattttta 42641935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 43034586 - 43034548
Alignment:
Q  218 ttatttgattcaatggtcc-tcaaataatttcaagtttt 255  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  43034586 ttatttgattcaatggtccctcaaataatttcaagtttt 43034548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 11317486 - 11317445
Alignment:
Q  215 ggcttatttgattcaatggt-cctcaaataatttcaagtttt 255  Q
    |||||||||||||||||||| |||||||||||||||| ||||    
T  11317486 ggcttatttgattcaatggtccctcaaataatttcaaatttt 11317445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 109728 - 109653
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaaccttaaccgtttgatc 358  Q
    ||||| ||||||||| |||| |||||| | ||||||||||||||||||||||||||||||  |||||| |||||||    
T  109728 aatgtatatggtggaccaaccttaaaaatagtccatcgtagaccttattaattttgttaattttaaccatttgatc 109653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 109864 - 109822
Alignment:
Q  214 aggcttatttgattcaatggt-cctcaaataatttcaagtttt 255  Q
    ||||||||||||||||||||| ||| |||||||||||||||||    
T  109864 aggcttatttgattcaatggtcccttaaataatttcaagtttt 109822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1152 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold1152
Description:

Target: scaffold1152; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 290 - 337
Target Start/End: Complemental strand, 2451 - 2404
Alignment:
Q  290 atggtggatcaactttaaaagtggtccatcgtagaccttattaatttt 337  Q
    |||||||| |||| |||||||||||| |||||||||||||||||||||    
T  2451 atggtggaccaaccttaaaagtggtctatcgtagaccttattaatttt 2404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 342
Target Start/End: Original strand, 52725 - 52784
Alignment:
Q  283 aatgtctatggtggatcaactttaaaagtggtccatcgtagaccttattaattttgttaa 342  Q
    ||||| ||||||||| |||| |||||| ||||| || |||||||||||||||||| ||||    
T  52725 aatgtatatggtggaccaaccttaaaaatggtctatggtagaccttattaattttcttaa 52784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 123967 - 124008
Alignment:
Q  215 ggcttatttgattcaatggtcc-tcaaataatttcaagtttt 255  Q
    |||||||||||| ||||||||| |||||||||||||||||||    
T  123967 ggcttatttgatccaatggtccttcaaataatttcaagtttt 124008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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