View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14198_low_5 (Length: 533)

Name: NF14198_low_5
Description: NF14198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14198_low_5
NF14198_low_5
[»] chr2 (1 HSPs)
chr2 (19-519)||(5950078-5950578)
[»] chr1 (1 HSPs)
chr1 (260-504)||(28320642-28320886)


Alignment Details
Target: chr2 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 19 - 519
Target Start/End: Complemental strand, 5950578 - 5950078
Alignment:
Q  19 aaggtatacatctattgcgtggtatataccgtcatcaaggggtctggcataatcaggaattgcaacagcaagtgcctgaaatttagacaggtttagatta 118  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5950578 aaggtatacatctattgcgtggtatataccgtcgtcaaggggtctggcataatcaggaattgcaacagcaagtgcctgaaatttagacaggtttagatta 5950479  T
Q  119 gcatctgaagcgacttcggcaagatatccatctaccaagttagcgaccattgtcatcggtgtcaacgtatcaaccccagcaattaatgttccaatttcag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5950478 gcatctgaagcgacttcggcaagatatccatctaccaagttagcgaccattgtcatcggtgtcaacgtatcaaccccagcaattaatgttccaatttcag 5950379  T
Q  219 ttatacatggagaagcagataaagatgcaggctggtagatagacataaaatggtccagaatcctctgaatacaatctatatcataaagcgtctcgaccga 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5950378 ttatacatggagaagcagataaagatgcaggctggtagatagacataaaatggtccagaatcctctgaatacaatctatatcataaagcgtctcgaccga 5950279  T
Q  319 gtatcccatatttggaatgagaagatccacaagtgaagcctgatctagttgagctcctacccttttctctaaattctctttgcatgatggacttgcacgt 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5950278 gtatcccatatttggaatgagaagatccacaagtgaagcctgatctagttgagctcctacccttttctctaaattctctttgcatgatggacttgcacgt 5950179  T
Q  419 aatatcattgcggttcggagcaaccgaaggagatgcttagaggatgtgacacctctcttattaggaatcaattccacaatttcttctagtaaaccccttt 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5950178 aatatcattgcggttcggagcaaccgaaggagatgcttagaggatgtgacacctctcttattaggaatcaactccacaatttcttctagtaaaccccttt 5950079  T
Q  519 g 519  Q
    |    
T  5950078 g 5950078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 260 - 504
Target Start/End: Original strand, 28320642 - 28320886
Alignment:
Q  260 gacataaaatggtccagaatcctctgaatacaatctatatcataaagcgtctcgaccgagtatcccatatttggaatgagaagatccacaagtgaagcct 359  Q
    ||||||||||| || | ||| || ||||||||||||||||||||||| ||||| || || |||||||||||||| || | || ||||||||||  | | |    
T  28320642 gacataaaatgatcaataattctttgaatacaatctatatcataaagtgtctcaactgaatatcccatatttggtatcaaaatatccacaagttcaactt 28320741  T
Q  360 gatctagttgagctcctacccttttctctaaattctctttgcatgatggacttgcacgtaatatcattgcggttcggagcaaccgaaggagatgcttaga 459  Q
     ||| || || |  || ||||||||||| ||||| ||| ||||||||| ||||||| |||||||||| || ||||  ||||||| ||| |||| ||||||    
T  28320742 catcaagctgtgaaccaacccttttctccaaattttctatgcatgatgaacttgcatgtaatatcatagctgttcttagcaacctaagaagatacttaga 28320841  T
Q  460 ggatgtgacacctctcttattaggaatcaattccacaatttcttc 504  Q
     |   | |||| | | ||||||||||||||  | |||||||||||    
T  28320842 agggattacactttttttattaggaatcaaccctacaatttcttc 28320886  T

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