View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14198_low_7 (Length: 369)
Name: NF14198_low_7
Description: NF14198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14198_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 56 - 353
Target Start/End: Original strand, 52759670 - 52759969
Alignment:
| Q |
56 |
taccagaaccatataccttaatttaaagctaaaggaatgctgagataatgtnnnnnnnnnn--tatgacattcatgtctaaggatatacaaagaccttnn |
153 |
Q |
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| T |
52759670 |
taccagaaccataaaccttaatttaaaactaaaggaatgcagagataatgtaaaaaaaaaaaatatgacattcatgtctaaggatatacaaagaccttaa |
52759769 |
T |
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| Q |
154 |
nnnnngctcaattgttagcatttttatgtctaaccatatgcatattattgttattatataaaataaaagtatcatatgaacatgctaaacattgtgtaac |
253 |
Q |
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| T |
52759770 |
aaaaagctcaattgttagcatttttatgtctaaccatatgcatattattgttattatataaaataaaagtatcatatgaacatgctaaacattgtgtaac |
52759869 |
T |
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| Q |
254 |
ttacccatatgcgtctacaatttcttgaaaagaagaagtaaaaatgttagtgcaaaaataggtgggtggtaactcatttgtctgcaaaacctgaactatt |
353 |
Q |
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| T |
52759870 |
ttacccatatgcgtctataatttcttgaaaagaagaagtaaaaatgttagtgcaaaaataggtgggtggtaactcatttgtctgcaaaacctgaactatt |
52759969 |
T |
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