View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14198_low_9 (Length: 342)
Name: NF14198_low_9
Description: NF14198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14198_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 322
Target Start/End: Original strand, 17528705 - 17529011
Alignment:
| Q |
16 |
atgtaataatattaccgatttgcaagagctacatgcggatcttcagatttcaacacaagctagtgatattaacatgagattgcaaggtagcttcatcaag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17528705 |
atgtaataatattaccgatttgcaagagctacatgcggatcttcagatttcaacacaagctagtgatattaacatgagattgcaaggtagcttcatcaag |
17528804 |
T |
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| Q |
116 |
accgtagagtgcatctatcaagtgcatccgcaatgatgcaggaccttttgccattttcattcccagctcaccagcaacgccaaatacagataatgccgat |
215 |
Q |
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||||||||||| ||||||||||||||||||||| |||| ||||||||| ||||| |||||||||| |||||||||||| |||||||||| |||||| ||| |
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| T |
17528805 |
accgtagagtgaatctatcaagtgcatccgcaacgatgaaggacctttcgccatcttcattcccaactcaccagcaacaccaaatacagctaatgctgat |
17528904 |
T |
|
| Q |
216 |
actgttgcatctaaagcatggtttttgtcaactgcaacaaaggcagcaataagtgcagtgactgcacacccagttgctgttattttttgcatcaatgcca |
315 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
17528905 |
actgccgcatctaaagcatggcttttgtcaactgcaacaaaggcagcaataagtgcagtgactgcacaccccgttgctgttattttttgcatcaatggca |
17529004 |
T |
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| Q |
316 |
ccccatt |
322 |
Q |
| |
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| ||||| |
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| T |
17529005 |
caccatt |
17529011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 322
Target Start/End: Complemental strand, 17657868 - 17657562
Alignment:
| Q |
16 |
atgtaataatattaccgatttgcaagagctacatgcggatcttcagatttcaacacaagctagtgatattaacatgagattgcaaggtagcttcatcaag |
115 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17657868 |
atgtaattatattaccgatttgcaagagctacatgcggatcttcagatttcaacacaagctagtgatattaacatgagattgcaaggtagcttcatcaag |
17657769 |
T |
|
| Q |
116 |
accgtagagtgcatctatcaagtgcatccgcaatgatgcaggaccttttgccattttcattcccagctcaccagcaacgccaaatacagataatgccgat |
215 |
Q |
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||||||||||| ||||||||||||||||||||| |||| ||||||||| ||||| |||||||||| |||||| ||||| || ||||||| |||||| ||| |
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| T |
17657768 |
accgtagagtgaatctatcaagtgcatccgcaacgatgtaggacctttcgccatcttcattcccaactcacctgcaacacctaatacagctaatgctgat |
17657669 |
T |
|
| Q |
216 |
actgttgcatctaaagcatggtttttgtcaactgcaacaaaggcagcaataagtgcagtgactgcacacccagttgctgttattttttgcatcaatgcca |
315 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
17657668 |
actgccgcatctaaagcatggcttttgtcaactgcaacaaaggcagcaataagtgcagtgactgcacaccccgttgctgttattttttgcatcaatggca |
17657569 |
T |
|
| Q |
316 |
ccccatt |
322 |
Q |
| |
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| ||||| |
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|
| T |
17657568 |
caccatt |
17657562 |
T |
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