View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14199_high_4 (Length: 261)

Name: NF14199_high_4
Description: NF14199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14199_high_4
NF14199_high_4
[»] chr6 (8 HSPs)
chr6 (17-144)||(34114598-34114726)
chr6 (207-248)||(34114494-34114535)
chr6 (21-91)||(34148842-34148912)
chr6 (21-91)||(34161458-34161528)
chr6 (18-56)||(34168465-34168503)
chr6 (215-248)||(34148677-34148710)
chr6 (215-248)||(34161293-34161326)
chr6 (212-241)||(34115549-34115578)
[»] chr4 (1 HSPs)
chr4 (214-248)||(48430646-48430680)
[»] scaffold0620 (1 HSPs)
scaffold0620 (17-53)||(3402-3438)


Alignment Details
Target: chr6 (Bit Score: 109; Significance: 6e-55; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 34114726 - 34114598
Alignment:
Q  17 actctcagattttgaagttcatcaatctccttcagaagttcagccattttttccttttgaaattcatccttacaaaactccgtcgtctccagcatcctca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||    
T  34114726 actctcagattttgaagttcatcaatctccttcagaagttcagccattttttccttttgaaattcatccttacaaaacttcgtattctccagcatcctca 34114627  T
Q  117 tctataggtttag-agttaattaatattt 144  Q
    ||||||||||||| |||||||||||||||    
T  34114626 tctataggtttagaagttaattaatattt 34114598  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 34114535 - 34114494
Alignment:
Q  207 gtgccctataaactttgttaacatttccagaaaaacttgcct 248  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  34114535 gtgccctataaactttgttaacatttccagaaaaacttgcct 34114494  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 34148912 - 34148842
Alignment:
Q  21 tcagattttgaagttcatcaatctccttcagaagttcagccattttttccttttgaaattcatccttacaa 91  Q
    ||||||||||||||||||| |||||||||||||||| ||||| |||||  | ||||| || ||||||||||    
T  34148912 tcagattttgaagttcatcgatctccttcagaagtttagccacttttttttgttgaagtttatccttacaa 34148842  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 34161528 - 34161458
Alignment:
Q  21 tcagattttgaagttcatcaatctccttcagaagttcagccattttttccttttgaaattcatccttacaa 91  Q
    ||||||||||||||||||| |||||||||||||||| ||||| |||||  | ||||| || ||||||||||    
T  34161528 tcagattttgaagttcatcgatctccttcagaagtttagccacttttttttgttgaagtttatccttacaa 34161458  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 34168503 - 34168465
Alignment:
Q  18 ctctcagattttgaagttcatcaatctccttcagaagtt 56  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  34168503 ctctcagattttgaagttcatcattctccttcagaagtt 34168465  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 34148710 - 34148677
Alignment:
Q  215 taaactttgttaacatttccagaaaaacttgcct 248  Q
    ||||||||||||||||||||||||||||||||||    
T  34148710 taaactttgttaacatttccagaaaaacttgcct 34148677  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 34161326 - 34161293
Alignment:
Q  215 taaactttgttaacatttccagaaaaacttgcct 248  Q
    ||||||||||||||||||||||||||||||||||    
T  34161326 taaactttgttaacatttccagaaaaacttgcct 34161293  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 241
Target Start/End: Complemental strand, 34115578 - 34115549
Alignment:
Q  212 ctataaactttgttaacatttccagaaaaa 241  Q
    ||||||||||||||||||||||||||||||    
T  34115578 ctataaactttgttaacatttccagaaaaa 34115549  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Original strand, 48430646 - 48430680
Alignment:
Q  214 ataaactttgttaacatttccagaaaaacttgcct 248  Q
    |||||||||||||| ||||||||||||||||||||    
T  48430646 ataaactttgttaagatttccagaaaaacttgcct 48430680  T

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Target: scaffold0620 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 3438 - 3402
Alignment:
Q  17 actctcagattttgaagttcatcaatctccttcagaa 53  Q
    |||||||||||||||||||||||| |||| |||||||    
T  3438 actctcagattttgaagttcatcattctctttcagaa 3402  T

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