View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14199_low_2 (Length: 411)
Name: NF14199_low_2
Description: NF14199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14199_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 401
Target Start/End: Complemental strand, 2717877 - 2717495
Alignment:
| Q |
19 |
gacacatgttagtgttcgatatgaaacaacatcaacacatgtgattacattcaatcgtttcaattttatcaaattattaccagtatctacatgtgtgcct |
118 |
Q |
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| T |
2717877 |
gacacatgttagtgttcgatatgaaacaacatcaacacatgtgattacattcaatcgtttcaattttatcaaattattaccagtatctacatgtgtgcct |
2717778 |
T |
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| Q |
119 |
gtgtccgtacatagctctatagtatttcgataataatcttatgatgttatatgatgcagataaaatggatttgtccaactgctcctacccgccctgtagc |
218 |
Q |
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| T |
2717777 |
gtgtccgtgcgtagctctatagtatttcgataataaccttatgatgttatatgatgcagataaaatggatttgtccaactgctcctacccgccctgtagc |
2717678 |
T |
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| Q |
219 |
tatacttggtcgcttttcttgcactgcatgtaatgttaaatccctcttgttctcttagnnnnnnnccttactaaatcagaattttgtaactgttaaatat |
318 |
Q |
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| T |
2717677 |
tatacttggtcgcttttcttgcactgcatgtaatgttaaatccctcttgttctcttagtttttttccttattaaatcagaattgtgtaactgttaaatat |
2717578 |
T |
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| Q |
319 |
gtacatttaagtgtatattatagccttatattttgctatttaacaatgatcagggtttgatatgggagaactatcagatgatg |
401 |
Q |
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| T |
2717577 |
gtacatttaagtgtatattatagccttatattttgctatttaacaatgatcagggtttgatatgggagaactatcagatgatg |
2717495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 305 - 399
Target Start/End: Complemental strand, 17900541 - 17900447
Alignment:
| Q |
305 |
taactgttaaatatgtacatttaagtgtatattatagccttatattttgctatttaacaatgatcagggtttgatatgggagaactatcagatga |
399 |
Q |
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| T |
17900541 |
taactgttaagtatgcacagataagtatatattataaccttacattttgttatttaacaatgatcagggtttgatatgggagaactttcagatga |
17900447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 157 - 252
Target Start/End: Original strand, 44432798 - 44432893
Alignment:
| Q |
157 |
ttatgatgttatatgatgcagataaaatggatttgtccaactgctcctacccgccctgtagctatacttggtcgcttttcttgcactgcatgtaat |
252 |
Q |
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| T |
44432798 |
ttatgatatgatatgatacagataaaatggatttgccctactgctcctacccgtcccgtggcgatacttggtggttttccctgcactgcatgtaat |
44432893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 49635605 - 49635529
Alignment:
| Q |
175 |
cagataaaatggatttgtccaactgctcctacccgccctgtagctatacttggtcgcttttcttgcactgcatgtaa |
251 |
Q |
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| T |
49635605 |
cagattaaatggatttgtccaactgctcctacgcggcctgtagccttatttggtggatttccttgcactgcttgtaa |
49635529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 36895415 - 36895368
Alignment:
| Q |
51 |
caacacatgtgattacattcaatcgtttcaattttatcaaattattac |
98 |
Q |
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| T |
36895415 |
caacacatgtgattacattcaatcacttatattttatcaaattattac |
36895368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 18262791 - 18262835
Alignment:
| Q |
53 |
acacatgtgattacattcaatcgtttcaattttatcaaattatta |
97 |
Q |
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| T |
18262791 |
acacatgtgattactttcaattaattcaattttatcaaattatta |
18262835 |
T |
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