View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1419_high_12 (Length: 295)
Name: NF1419_high_12
Description: NF1419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1419_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 56 - 276
Target Start/End: Complemental strand, 46860775 - 46860550
Alignment:
| Q |
56 |
tcattcccatcaaataatcgagcgtaagttaactcacgtatgacgacgggaatgagcaaaaata---gataggagaagagca-----cctcattttgaag |
147 |
Q |
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| T |
46860775 |
tcattcccatcaaataatcgagcgtaaattaactcgcgtaggacg---ggaatgaacaaaaataatagatgggagaagtgcaatcctcctcgttttgaag |
46860679 |
T |
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| Q |
148 |
aggcccatcgactcaacatctctacgaaattcaaaacaacagaatgcacgcgctgccacttttcgccttgtttgtatcacactgaagtctgaactcaact |
247 |
Q |
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| T |
46860678 |
aggcccatcaactgaacatctctacgaaattcaaaacaacagaatgcacgcgctgccacttttcgccttgtttgtatcacactgaagtctgaactcaact |
46860579 |
T |
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| Q |
248 |
gtccgggaaacgctaccggacgtggtcgc |
276 |
Q |
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| T |
46860578 |
gtccgggaaacgctaccggacgtggtcgc |
46860550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 134
Target Start/End: Original strand, 30490044 - 30490074
Alignment:
| Q |
104 |
ggaatgagcaaaaatagataggagaagagca |
134 |
Q |
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| T |
30490044 |
ggaatgagcaaaaatagataggagaagagca |
30490074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 41909399 - 41909361
Alignment:
| Q |
55 |
ctcattcccatcaaataatcgagcgtaagttaactcacg |
93 |
Q |
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| T |
41909399 |
ctcattcccgtcaaataatcaagcgtaagttaactcacg |
41909361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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