View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1419_high_14 (Length: 289)
Name: NF1419_high_14
Description: NF1419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1419_high_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 45302644 - 45302901
Alignment:
| Q |
19 |
agaatttaatacaaagacatgaaccaatttagtggtttattcaataaaataactatacttttttctagtacactctcctttttatatggatgggtaacaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
45302644 |
agaatttaatacaaagacatgaaccaatttagtggtttactcaataaaataactatacttttttctagtacactctcctttttatatggatgggtaaaaa |
45302743 |
T |
|
| Q |
119 |
ttagatgcaattcttacctctcttcatactattcaacactaaagatgtaaaaaaccagtcaaagactagatcaatataaaactgttttaaatccatttgg |
218 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
45302744 |
ttagatgcaattcttacctctcttcgtactattcaacactaaagatgtaaaaaaacagtcaaagactagatcaatataaaactgttttaaattcatttgg |
45302843 |
T |
|
| Q |
219 |
tgtttgtctaatggttggtttg-gatcttggagtttgcttctctcaagttttcaggtt |
275 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
45302844 |
tgtttgtctaatggttggtttgagatcttggagtttgcttctctcaagttttcaggtt |
45302901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 11715000 - 11714953
Alignment:
| Q |
230 |
tggttggtttg-gatcttggagtttgcttctctcaagttttcaggttc |
276 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11715000 |
tggttggtttgagatcttggagtttgcttctctcaagatttcaggttc |
11714953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 265
Target Start/End: Original strand, 28908817 - 28908877
Alignment:
| Q |
206 |
taaatccatttggtgtttgtctaatggttggtttgg-atcttggagtttgcttctctcaag |
265 |
Q |
| |
|
||||| ||||||| ||| ||||| |||||||||||| || |||||||||||| |||||||| |
|
|
| T |
28908817 |
taaattcatttggagttggtctagtggttggtttggaattttggagtttgctcctctcaag |
28908877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 265
Target Start/End: Complemental strand, 34694781 - 34694721
Alignment:
| Q |
206 |
taaatccatttggtgtttgtctaatggttggtttg-gatcttggagtttgcttctctcaag |
265 |
Q |
| |
|
||||||||||||| ||| ||||| |||||| ||| |||||||||||||||| |||||||| |
|
|
| T |
34694781 |
taaatccatttggggttggtctagtggttgacttgtgatcttggagtttgctcctctcaag |
34694721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 10399765 - 10399819
Alignment:
| Q |
206 |
taaatccatttggtgtttgtctaatggttgg-tttggatcttggagtttgcttct |
259 |
Q |
| |
|
||||||||||||||||| ||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
10399765 |
taaatccatttggtgttggtctagtggttgactttggatcttggagtttgcttct |
10399819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 276
Target Start/End: Complemental strand, 25237174 - 25237123
Alignment:
| Q |
226 |
ctaatggttggtttgg-atcttggagtttgcttctctcaagttttcaggttc |
276 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||| | |||||||| |
|
|
| T |
25237174 |
ctaatggttagtttgggatcttggagtttgcttctctcaaggtctcaggttc |
25237123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 50582989 - 50583055
Alignment:
| Q |
211 |
ccatttggtgtttgtctaatggttggtttgg-atcttggagtttgcttctctcaagttttcaggttc |
276 |
Q |
| |
|
|||||||| ||| | ||| |||||||||||| ||||||||||||||| |||| ||| |||||||||| |
|
|
| T |
50582989 |
ccatttggggttggcctagtggttggtttgggatcttggagtttgctcctcttaaggtttcaggttc |
50583055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 277
Target Start/End: Original strand, 36660786 - 36660834
Alignment:
| Q |
230 |
tggttggttt-ggatcttggagtttgcttctctcaagttttcaggttca |
277 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||| | ||||||||| |
|
|
| T |
36660786 |
tggttggtttaggatcttggagtttgctcctctcaaggtctcaggttca |
36660834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University