View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1419_high_18 (Length: 261)
Name: NF1419_high_18
Description: NF1419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1419_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 36523254 - 36523501
Alignment:
| Q |
16 |
cagaaaggatataagtatgtctagcccaccatgccttgaactttctataaacatagaaattgaaaaccattc---------cccaagtaatgtaattcac |
106 |
Q |
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| T |
36523254 |
cagaaaggatataagtatgtctagcccaccatgccttgaactttctataaacatagaaattgaaaaccattccaacaattccccaagtaatgtaattcac |
36523353 |
T |
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| Q |
107 |
agatctcactggtggaatgccagatgcacctgcggcgataataggaatgttaatgagttgaatccacttttggttacgaaatttgagagaaagaagccac |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36523354 |
agatctcactggtggaatgccagatgcacctgcggcgataataggaatgttaatgagttgaatccacttttggttacgaaatttgagagaaagaagccac |
36523453 |
T |
|
| Q |
207 |
actggaacaggtgcaagtagaccaataaggaaaaaccaattcatctca |
254 |
Q |
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| T |
36523454 |
actggaacaggtgcaagtagaccaataaggaaaaaccaattcatctca |
36523501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 36530089 - 36530329
Alignment:
| Q |
18 |
gaaaggatataagtatgtctagcccaccatgccttgaactttctataaacatagaaattgaaaaccattcc---------ccaagtaatgtaattcacag |
108 |
Q |
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| T |
36530089 |
gaaaggatgtaagtatgtctagcccaccatgctttgaactttctataaacatagaaattgaaaaatattccaacaatcccccaagtaatataattcacag |
36530188 |
T |
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| Q |
109 |
atctcactggtggaatgccagatgcacctgcggcgataataggaatgttaatgagttgaatccacttttggttacgaaatttgagagaaagaagccacac |
208 |
Q |
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| T |
36530189 |
atctcacaggtgggatgtcagatgcacctgcaatgataataggaatgttgatgaattgaatccacttttggttgggaaatttgagagaaagaagccacac |
36530288 |
T |
|
| Q |
209 |
tggaacaggtgcaagtagaccaataaggaaaaaccaattca |
249 |
Q |
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| T |
36530289 |
gggaactggtgcgattagaccgataaggaaaaaccaattca |
36530329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 24 - 251
Target Start/End: Original strand, 36535707 - 36535943
Alignment:
| Q |
24 |
atataagtatgtctagcccaccatgccttgaactttctataaacatagaaattgaaaaccattcc---------ccaagtaatgtaattcacagatctca |
114 |
Q |
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| T |
36535707 |
atataagtatgtctagcccaccaaactctgaactttctataaacatagaaattgaaaaacattccaacaattccccaagtaatataattcacagatctcc |
36535806 |
T |
|
| Q |
115 |
ctggtggaatgccagatgcacctgcggcgataataggaatgttaatgagttgaatccacttttggttacgaaatttgagagaaagaagccacactggaac |
214 |
Q |
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| T |
36535807 |
tgggaggaatagtagatgcacctacaatgataataggaatgttgataagtttaatccacttgtggttaggaaatttgatagaaagaagccacaccggtac |
36535906 |
T |
|
| Q |
215 |
aggtgcaagtagaccaataaggaaaaaccaattcatc |
251 |
Q |
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| T |
36535907 |
aggtgcaattaggccaataaggaaaaaccaattcatc |
36535943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 153 - 250
Target Start/End: Complemental strand, 42059988 - 42059891
Alignment:
| Q |
153 |
atgttaatgagttgaatccacttttggttacgaaatttgagagaaagaagccacactggaacaggtgcaagtagaccaataaggaaaaaccaattcat |
250 |
Q |
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| T |
42059988 |
atgttgatgagttcaatccacttgtggttcgggtatttgcgagctagaagccacactggaacaggcgcaagtagaccgatgaggaaaaaccaattcat |
42059891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 249
Target Start/End: Complemental strand, 42075295 - 42075189
Alignment:
| Q |
143 |
gataataggaatgttaatgagttgaatccacttttggttacgaaatttgagagaaagaagccacactggaacaggtgcaagtagaccaataaggaaaaac |
242 |
Q |
| |
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|||||| || ||||| | ||||| |||||||||| |||| | ||||| ||| |||||||||||||||||||| ||||||||||| || ||||||||| |
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| T |
42075295 |
gataattggcatgttgacgagttcaatccactttcggtttgggtatttgcgagctagaagccacactggaacaggcgcaagtagaccgatgaggaaaaac |
42075196 |
T |
|
| Q |
243 |
caattca |
249 |
Q |
| |
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||||||| |
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| T |
42075195 |
caattca |
42075189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 250
Target Start/End: Complemental strand, 42083865 - 42083768
Alignment:
| Q |
153 |
atgttaatgagttgaatccacttttggttacgaaatttgagagaaagaagccacactggaacaggtgcaagtagaccaataaggaaaaaccaattcat |
250 |
Q |
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| T |
42083865 |
atgttgatgagttcaatccacttgtggttcgggtatttgcgagctagaaaccacaccggaacaggcgcaagtagaccgatgaggaaaaaccaattcat |
42083768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 42060123 - 42060071
Alignment:
| Q |
27 |
taagtatgtctagcccaccatgccttgaactttctataaacatagaaattgaa |
79 |
Q |
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| T |
42060123 |
taagtgtgtctagcccaccatgccttgaaatttttgtaaacatagaaattgaa |
42060071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 42084000 - 42083948
Alignment:
| Q |
27 |
taagtatgtctagcccaccatgccttgaactttctataaacatagaaattgaa |
79 |
Q |
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||||| ||||||||||||||||||||||| ||| | ||||||||||||||||| |
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| T |
42084000 |
taagtgtgtctagcccaccatgccttgaaatttttgtaaacatagaaattgaa |
42083948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 42075420 - 42075368
Alignment:
| Q |
27 |
taagtatgtctagcccaccatgccttgaactttctataaacatagaaattgaa |
79 |
Q |
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||||| ||||||||||||||| ||||||| ||| | |||||||||| |||||| |
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| T |
42075420 |
taagtgtgtctagcccaccataccttgaattttttgtaaacatagatattgaa |
42075368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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