View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1419_high_26 (Length: 216)
Name: NF1419_high_26
Description: NF1419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1419_high_26 |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (6 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 15369724 - 15369511
Alignment:
| Q |
1 |
tatacttaagctagtgataaatgtttgctcttttgacccctatttattatttatctcccaaaacgtttgtgtgggggtgggataagcaaggctctgaatg |
100 |
Q |
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| T |
15369724 |
tatacttaagctagtgataaatgtttgctcttttgacccctatttattatttatctcccaaaacgtttctgtgggggtgggataagcaaggctcttaatg |
15369625 |
T |
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| Q |
101 |
atgaaatatgatcgaattcacatttatctgtatcaacaaaagaaagccgaacaattggtcnnnnnnngtgaaaaggctggcttcgcccaggttcgaactg |
200 |
Q |
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| T |
15369624 |
atgaaatatgatcgaattaacatt--tctgtatcaacaaaagaaagcagaacaattggtcaaaaaaagtaaagtggctggcttcgcccaggctcgaactg |
15369527 |
T |
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| Q |
201 |
gggaccttcagtgtgt |
216 |
Q |
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| T |
15369526 |
gggaccttcagtgtgt |
15369511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 9577761 - 9577723
Alignment:
| Q |
178 |
tggcttcgcccaggttcgaactggggaccttcagtgtgt |
216 |
Q |
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| T |
9577761 |
tggcttcgcccaggtttgaactggggaccttcagtgtgt |
9577723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 13009789 - 13009827
Alignment:
| Q |
178 |
tggcttcgcccaggttcgaactggggaccttcagtgtgt |
216 |
Q |
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| T |
13009789 |
tggcttcgcccaggctcgaactggggaccttcagtgtgt |
13009827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 13011029 - 13011067
Alignment:
| Q |
178 |
tggcttcgcccaggttcgaactggggaccttcagtgtgt |
216 |
Q |
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| T |
13011029 |
tggcttcgcccaggtttgaactggggaccttcagtgtgt |
13011067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 13117911 - 13117873
Alignment:
| Q |
178 |
tggcttcgcccaggttcgaactggggaccttcagtgtgt |
216 |
Q |
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| T |
13117911 |
tggcttcgcccaggctcgaactggggaccttcagtgtgt |
13117873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 13135647 - 13135609
Alignment:
| Q |
178 |
tggcttcgcccaggttcgaactggggaccttcagtgtgt |
216 |
Q |
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| T |
13135647 |
tggcttcgcccaggctcgaactggggaccttcagtgtgt |
13135609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 18668981 - 18669019
Alignment:
| Q |
178 |
tggcttcgcccaggttcgaactggggaccttcagtgtgt |
216 |
Q |
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| T |
18668981 |
tggcttcgcccaggctcgaactggggaccttcagtgtgt |
18669019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 41866262 - 41866300
Alignment:
| Q |
178 |
tggcttcgcccaggttcgaactggggaccttcagtgtgt |
216 |
Q |
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| T |
41866262 |
tggcttcgcccaggctcgaactggggaccttcagtgtgt |
41866300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 28261754 - 28261792
Alignment:
| Q |
178 |
tggcttcgcccaggttcgaactggggaccttcagtgtgt |
216 |
Q |
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|||||||||||||| | |||||||||||||||||||||| |
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| T |
28261754 |
tggcttcgcccaggctagaactggggaccttcagtgtgt |
28261792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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