View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1419_high_3 (Length: 411)

Name: NF1419_high_3
Description: NF1419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1419_high_3
NF1419_high_3
[»] chr2 (7 HSPs)
chr2 (1-283)||(34689155-34689437)
chr2 (1-283)||(34711567-34711849)
chr2 (311-393)||(34689465-34689547)
chr2 (311-393)||(34711877-34711959)
chr2 (62-147)||(16229578-16229663)
chr2 (34-147)||(34687071-34687184)
chr2 (34-147)||(34709483-34709596)
[»] chr5 (1 HSPs)
chr5 (330-383)||(4384399-4384452)


Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 34689155 - 34689437
Alignment:
Q  1 aaactaacaccagaattgcatgctctgtcaatattgtgtgtggccattagagtccctaactagtagcataactttactacttctactctatgcatgcaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34689155 aaactaacaccagaattgcatgctctgtcaatattgtgtgtggccattagagtccctaactagtagcataactttactacttctactctatgcatgcaat 34689254  T
Q  101 ctctgcaagtaacaaacaatagagttatattttaactaaaatatttcctaaaatttactatcagaaattattcagaactgaaatatctttctttaatcaa 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34689255 ctctgcaagtaacaaacaatagagttacattttaactaaaatatttcttaaaatttactatcagaaattattcagaactgaaatatctttctttaatcaa 34689354  T
Q  201 aactttactaaacaagggaaatctgaaatatatcataaaaatgcagcatggcatgggaattataaattctagtcatccttcct 283  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34689355 aactttactaaacaagggaaacctgaaatatatcataaaaatgcagcatggcatgggaattataaattctagtcatccttcct 34689437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 34711567 - 34711849
Alignment:
Q  1 aaactaacaccagaattgcatgctctgtcaatattgtgtgtggccattagagtccctaactagtagcataactttactacttctactctatgcatgcaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34711567 aaactaacaccagaattgcatgctctgtcaatattgtgtgtggccattagagtccctaactagtagcataactttactacttctactctatgcatgcaat 34711666  T
Q  101 ctctgcaagtaacaaacaatagagttatattttaactaaaatatttcctaaaatttactatcagaaattattcagaactgaaatatctttctttaatcaa 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34711667 ctctgcaagtaacaaacaatagagttacattttaactaaaatatttcttaaaatttactatcagaaattattcagaactgaaatatctttctttaatcaa 34711766  T
Q  201 aactttactaaacaagggaaatctgaaatatatcataaaaatgcagcatggcatgggaattataaattctagtcatccttcct 283  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34711767 aactttactaaacaagggaaacctgaaatatatcataaaaatgcagcatggcatgggaattataaattctagtcatccttcct 34711849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 311 - 393
Target Start/End: Original strand, 34689465 - 34689547
Alignment:
Q  311 ttatgtcttttggagtcattatgtacaacctataccacaaaactaatcaagaacttttcagttttattgaaaattaaacattt 393  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34689465 ttatgtcttttggagtcattatgtacaacctatacgacaaaactaatcaagaacttttcagttttattgaaaattaaacattt 34689547  T

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Target: chr2; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 311 - 393
Target Start/End: Original strand, 34711877 - 34711959
Alignment:
Q  311 ttatgtcttttggagtcattatgtacaacctataccacaaaactaatcaagaacttttcagttttattgaaaattaaacattt 393  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34711877 ttatgtcttttggagtcattatgtacaacctatacgacaaaactaatcaagaacttttcagttttattgaaaattaaacattt 34711959  T

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Target: chr2; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 62 - 147
Target Start/End: Original strand, 16229578 - 16229663
Alignment:
Q  62 agtagcataactttactacttctactctatgcatgcaatctctgcaagtaacaaacaatagagttatattttaactaaaatatttc 147  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||    
T  16229578 agtagcataagtttactacttctactctatgcatgcaatcgctgcaagtaacaaacaatagagttatatttaaattaaaatatttc 16229663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 34 - 147
Target Start/End: Original strand, 34687071 - 34687184
Alignment:
Q  34 ttgtgtgtggccattagagtccctaactag--tagcataactttactacttctactctatgcatgcaatctctgcaagtaacaaacaatagagttatatt 131  Q
    |||||||||||||  |||||||||||||||  || ||||| |||||| |||||||||||||||| | |||||| |||||||||||||||  |||||||||    
T  34687071 ttgtgtgtggcca--agagtccctaactagagtatcataagtttacttcttctactctatgcatacgatctctacaagtaacaaacaatcaagttatatt 34687168  T
Q  132 ttaactaaaatatttc 147  Q
    |||| | |||||||||    
T  34687169 ttaatttaaatatttc 34687184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 34 - 147
Target Start/End: Original strand, 34709483 - 34709596
Alignment:
Q  34 ttgtgtgtggccattagagtccctaactag--tagcataactttactacttctactctatgcatgcaatctctgcaagtaacaaacaatagagttatatt 131  Q
    |||||||||||||  |||||||||||||||  || ||||| |||||| |||||||||||||||| | |||||| |||||||||||||||  |||||||||    
T  34709483 ttgtgtgtggcca--agagtccctaactagagtatcataagtttacttcttctactctatgcatacgatctctacaagtaacaaacaatcaagttatatt 34709580  T
Q  132 ttaactaaaatatttc 147  Q
    |||| | |||||||||    
T  34709581 ttaatttaaatatttc 34709596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 330 - 383
Target Start/End: Complemental strand, 4384452 - 4384399
Alignment:
Q  330 tatgtacaacctataccacaaaactaatcaagaacttttcagttttattgaaaa 383  Q
    |||||||||| ||||| |||||| ||||||||||||||||||||||||| ||||    
T  4384452 tatgtacaacttatacaacaaaattaatcaagaacttttcagttttattaaaaa 4384399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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