View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1419_high_6 (Length: 364)
Name: NF1419_high_6
Description: NF1419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1419_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 13 - 346
Target Start/End: Original strand, 11172903 - 11173249
Alignment:
| Q |
13 |
aatatcacacacaaaattagcaaatgataaattgatttatagcaacaatgaccataatatataataatcccaggtgaaata-----------------ta |
95 |
Q |
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| T |
11172903 |
aatatcacacacaaaattaccaaatgataaattgatatttagcaacaatgaccataatatataataatcccaggtgaaataattcaagtacatatatata |
11173002 |
T |
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| Q |
96 |
taatatggaaaacaacattataccctccaataaacaaatttaactgaaaaatccgactcaaccgaataacttattaacttatgagtccatattcaccaat |
195 |
Q |
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| T |
11173003 |
taatatggaaaaca---ttataccccccaataaacaaatttaactgaaaaatccgactcaaccgaataacttattagcatatgaatccatattcaccaat |
11173099 |
T |
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| Q |
196 |
gatgagaaacaaagttttctatatgacacatacaattcaaatatgaagattccaattaacttcagcatagcacaaaggctttcactgaaggtattgttct |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11173100 |
gatgagaaacaaagttttctatatgacacatacaattcaaatatgaagattccaattaacttcagcatagcacaaaggc-ttcactgaaggtattgttct |
11173198 |
T |
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| Q |
296 |
cgaagtctatctctgttctcatcccaccatttccttgcctctgcatctcca |
346 |
Q |
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| T |
11173199 |
cgaagtctatctctgttctcatcccaccatttccttgcctctgcatctcca |
11173249 |
T |
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