View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1419_high_9 (Length: 313)
Name: NF1419_high_9
Description: NF1419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1419_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 13 - 299
Target Start/End: Complemental strand, 980661 - 980374
Alignment:
| Q |
13 |
aatatacagttgtgaattgtttgatgcaaaatgcaattatgcaagtacctagaaatatttataggttcaactagagagctctagattcacttctacaatt |
112 |
Q |
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| T |
980661 |
aatatacagttgtgaattgtttgatgcaaaatgcaattatgcaagtacctagaaatatttataggttcaactagagagctctagactcacttatacaatt |
980562 |
T |
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| Q |
113 |
ttgctaattaaaatttactactaaagtttgtttagagtaatgaaggagcttgactacttct-annnnnnnnnaaaaccccggttaattggtttgaggact |
211 |
Q |
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| T |
980561 |
tttctaattaaaatttactactaaagtttgtttagagtaatgaaggagcttgactacttctaatttttttttaaaaccccggttaattggtttgaggact |
980462 |
T |
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| Q |
212 |
tgaactttccacttctaggctaaagttttaaatcacttgcccgaagatcaaaaatccgcagctgagtctagtgccttttcaacaatgt |
299 |
Q |
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| T |
980461 |
tgaactttccacttctaggctaaagttttaaatcacttgcccgaagatcaaaaatccgcagctgagtctagtgccttttcaacaatgt |
980374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 25 - 299
Target Start/End: Complemental strand, 27146762 - 27146488
Alignment:
| Q |
25 |
tgaattgtttgatgcaaaatgcaattatgcaagtacctagaaatatttataggttcaactagagagctctagattcacttctacaattttgctaattaaa |
124 |
Q |
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| T |
27146762 |
tgaattgtttgatgcaaaatgcaattatgcaagtacctagaaatatttataggttcaactagagagctctagactcacttctacaattttgctaattaaa |
27146663 |
T |
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| Q |
125 |
atttactactaaagtttgtttagagtaatgaaggagcttgactacttctannnnnnnnnaaaaccccggttaattggtttgaggacttgaactttccact |
224 |
Q |
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| T |
27146662 |
atttactactaaagtttgtttagagtaatgaaggagcttgactacttctaattttttttaaaaccccgtttaattggtttgaggacttgaactttccact |
27146563 |
T |
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| Q |
225 |
tctaggctaaagttttaaatcacttgcccgaagatcaaaaatccgcagctgagtctagtgccttttcaacaatgt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
27146562 |
tctaggctaaagttttaaatcacttgcccgaagatcaaaaatccgcagttgagtctagtgccttttcaacaatgt |
27146488 |
T |
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