View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1419_low_1 (Length: 491)
Name: NF1419_low_1
Description: NF1419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1419_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Complemental strand, 7267561 - 7267089
Alignment:
| Q |
1 |
agaaaattcaaaatatcattgactaaatgactttatgcattgagtttgaggcagctacctgtttttgaaatctaagcaaagatcaatagtggcttgtaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7267561 |
agaaaattcaaaatatcattgactaaatgactttatgcattgagtttgaggcagctacctgtttttgaaatctaagcaaagatcaatagtggcttgtaga |
7267462 |
T |
|
| Q |
101 |
agcaatctctctcgaaaatacaacaatccctccattccttctcccttcaaatcctcttactagatccatcatataacctcgaattaaatccccttactat |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7267461 |
agcaatctctctcgtaaatacaacaatccctccattccttctcccttcaaatgctcttactagatccatcaaataacctcgaattaaatccccttactat |
7267362 |
T |
|
| Q |
201 |
atataatataaatcatcacataaccatatagagagag--gccatggtaacattagcatccatggtcttcaccatttctcatttcaatctcctaactctct |
298 |
Q |
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|
||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7267361 |
ata--atataaatcatcacataaccatatagagagagaggccatggtaacattaacatccatggtcttcaccatttctcatttcaatctcctaactctct |
7267264 |
T |
|
| Q |
299 |
tatttctcttctcaacttatcaacatgtcacttgtaccaccactcaacgctttaaacaagcacctaaattctacaactcccctaactgtccctccattca |
398 |
Q |
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|
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7267263 |
tatttctcttctcaacttatcaacatgtcacctgtaccaccactcaactctttaaacaagcacctaaattctacaactcccctaactgtccctccattca |
7267164 |
T |
|
| Q |
399 |
tacgtcaacatggacaacttcgtcagagcaaactactcacacaaacacagacgactttatttgctcagacgaagc |
473 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
7267163 |
tacgtcaacatggacaacttcgtccgagcaaactacacacacaaacacagacgactttatttgctcagacgaagc |
7267089 |
T |
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