View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1419_low_10 (Length: 317)

Name: NF1419_low_10
Description: NF1419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1419_low_10
NF1419_low_10
[»] chr2 (1 HSPs)
chr2 (14-309)||(19177471-19177769)
[»] chr6 (2 HSPs)
chr6 (14-59)||(10603404-10603449)
chr6 (254-287)||(31899274-31899307)
[»] chr8 (2 HSPs)
chr8 (254-309)||(11961640-11961695)
chr8 (254-309)||(27790043-27790098)
[»] chr1 (1 HSPs)
chr1 (263-309)||(27895525-27895571)
[»] scaffold0015 (1 HSPs)
scaffold0015 (260-309)||(4815-4864)
[»] chr7 (1 HSPs)
chr7 (260-309)||(13851696-13851745)
[»] chr4 (1 HSPs)
chr4 (254-311)||(16403073-16403130)


Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 309
Target Start/End: Complemental strand, 19177769 - 19177471
Alignment:
Q  14 atggtatcataatttgcaaatcagagctagctgaaagatctataattaattaatacacaaaagtagtaacgcaacacactaaacaaagcgtttgcagaaa 113  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19177769 atgggatcataatttgcaaatcagagctagctgaaaggtctataattaattaatacacaaaagtagtaacgcaacacactaaacaaagcgtttgcagaaa 19177670  T
Q  114 taagtttggaaatacattatatatactttcatttgttaaaag--nnnnnnnnnttgtattatcattaaaaataatacaataaaagannnnnnnnnnnnna 211  Q
    ||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||             |    
T  19177669 taagtttggaaatacattatatatactttcatttgttaaaagaaaaaaaaaaattgtattatcattaaaaataatacaataaaagattttttctttttta 19177570  T
Q  212 gtcaagtagtctagtatttagaatttcatctctaatttgaag-tttttcttgaacaagccaaaatgaaatatattaaatcacgaaaagcgattcatctc 309  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19177569 gtcaagtagtctagtatttagaatttcatctctaatttgaagtttttttttgaacaagccaaaatgaaatatattaaatcacgaaaagcgattcatctc 19177471  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 10603404 - 10603449
Alignment:
Q  14 atggtatcataatttgcaaatcagagctagctgaaagatctataat 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  10603404 atggtatcataatttgcaaatcagagctagctgaaagatctataat 10603449  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 287
Target Start/End: Complemental strand, 31899307 - 31899274
Alignment:
Q  254 tttttcttgaacaagccaaaatgaaatatattaa 287  Q
    ||||| ||||||||||||||||||||||||||||    
T  31899307 ttttttttgaacaagccaaaatgaaatatattaa 31899274  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 309
Target Start/End: Original strand, 11961640 - 11961695
Alignment:
Q  254 tttttcttgaacaagccaaaatgaaatatattaaatcacgaaaagcgattcatctc 309  Q
    ||||| ||||||||||||||||| ||||||||| ||||||||||| | ||||||||    
T  11961640 ttttttttgaacaagccaaaatggaatatattagatcacgaaaagtggttcatctc 11961695  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 309
Target Start/End: Complemental strand, 27790098 - 27790043
Alignment:
Q  254 tttttcttgaacaagccaaaatgaaatatattaaatcacgaaaagcgattcatctc 309  Q
    ||||| ||||||||||||||||  ||||||||| ||||||||||| ||||||||||    
T  27790098 ttttttttgaacaagccaaaatagaatatattagatcacgaaaagtgattcatctc 27790043  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 27895571 - 27895525
Alignment:
Q  263 aacaagccaaaatgaaatatattaaatcacgaaaagcgattcatctc 309  Q
    |||||||||||||||||||||||| ||||| ||| | ||||||||||    
T  27895571 aacaagccaaaatgaaatatattagatcaccaaaggtgattcatctc 27895525  T

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Target: scaffold0015 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 4815 - 4864
Alignment:
Q  260 ttgaacaagccaaaatgaaatatattaaatcacgaaaagcgattcatctc 309  Q
    ||||| ||||||||||||||||||||||||||  ||| | ||||||||||    
T  4815 ttgaaaaagccaaaatgaaatatattaaatcatcaaaggggattcatctc 4864  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 13851745 - 13851696
Alignment:
Q  260 ttgaacaagccaaaatgaaatatattaaatcacgaaaagcgattcatctc 309  Q
    |||||||||||||||| |||||||||| ||||| || || ||||||||||    
T  13851745 ttgaacaagccaaaataaaatatattagatcacaaagagtgattcatctc 13851696  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 311
Target Start/End: Original strand, 16403073 - 16403130
Alignment:
Q  254 tttttcttgaacaagccaaaatgaaatatattaaatcacgaaaagcgattcatctcac 311  Q
    ||||| ||||||||||||||||| ||||||||  ||||| ||| | ||||||||||||    
T  16403073 ttttttttgaacaagccaaaatggaatatatttgatcaccaaaggtgattcatctcac 16403130  T

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