View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1419_low_12 (Length: 304)

Name: NF1419_low_12
Description: NF1419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1419_low_12
NF1419_low_12
[»] chr3 (3 HSPs)
chr3 (11-289)||(42209745-42210023)
chr3 (11-217)||(42222048-42222248)
chr3 (142-174)||(21866674-21866706)
[»] chr7 (2 HSPs)
chr7 (191-242)||(28976555-28976606)
chr7 (185-222)||(13380886-13380923)
[»] chr4 (5 HSPs)
chr4 (188-244)||(4145300-4145356)
chr4 (142-175)||(30617205-30617238)
chr4 (128-173)||(40601812-40601857)
chr4 (184-213)||(48449164-48449193)
chr4 (190-222)||(11570719-11570751)
[»] chr8 (3 HSPs)
chr8 (184-215)||(26555669-26555700)
chr8 (185-220)||(32616812-32616847)
chr8 (190-222)||(11674049-11674081)
[»] chr5 (3 HSPs)
chr5 (188-234)||(9153863-9153909)
chr5 (125-170)||(13510221-13510266)
chr5 (125-170)||(21780925-21780970)
[»] chr2 (4 HSPs)
chr2 (145-175)||(44460423-44460453)
chr2 (190-222)||(19978371-19978403)
chr2 (184-220)||(30358583-30358619)
chr2 (191-219)||(41947086-41947114)
[»] chr1 (3 HSPs)
chr1 (184-222)||(5095825-5095863)
chr1 (184-218)||(7347677-7347711)
chr1 (184-224)||(15707579-15707619)
[»] chr6 (3 HSPs)
chr6 (187-220)||(24781195-24781228)
chr6 (142-175)||(31696638-31696671)
chr6 (126-170)||(2457313-2457357)


Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 11 - 289
Target Start/End: Complemental strand, 42210023 - 42209745
Alignment:
Q  11 cagagaaacataacagcaccctagaactgaagggatcaatcggctatatcgccccaggtacttacttactaatgagtcttctccatcgatttgtactttc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42210023 cagagaaacataacagcaccctagaactgaagggatcaatcggctatatcgccccaggtacttacttactaatgagtcttctccatcgatttgtactttc 42209924  T
Q  111 ttttaccttctactagtgttgtcaaccgcatattgcagaaaatagcggtttgttcaaatttcactgtgtaacgatagcaatttgttcaaattctgctatg 210  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42209923 ttttaccttctaccagtgttatcaaccgcatattgcagaaaatagcggtttgttcaaatttcgctgtgtaacgatagcaatttgttcaaattctgctatg 42209824  T
Q  211 ctatagcgctatggcaccactattcaacaacacttcttttatgcataactatatatttgtgtatatatagctatctaat 289  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42209823 ctacagcgctatggcaccactattcaacaacacttcttttatgcataactatatatttgtgtatatatagctatctaat 42209745  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 217
Target Start/End: Complemental strand, 42222248 - 42222048
Alignment:
Q  11 cagagaaacataacagcaccctagaactgaagggatcaatcggctatatcgccccaggtacttacttactaatgagtcttctccatcgatttgtactttc 110  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||    ||||| | |||||| |  ||||  ||||||    
T  42222248 cagagaaacataacagcactctagaactgaagggatcgatcggctatatcgcgccaggtacttact----aatgattattctccttttattttcactttc 42222153  T
Q  111 ttttaccttctactagtgttgtcaaccgcatattgcagaaaatagcggtttgttcaaatttcactgtgtaacgatagcaatttgttcaaattctgctatg 210  Q
    ||||||||||||| |||| | |||||| || |||||| ||||||||||||||||| || ||   |||||||  |||||    ||||||||||| ||||||    
T  42222152 ttttaccttctaccagtggtatcaaccacaaattgcaaaaaatagcggtttgttccaagtt--ttgtgtaataatagcgcgatgttcaaattccgctatg 42222055  T
Q  211 ctatagc 217  Q
    |||||||    
T  42222054 ctatagc 42222048  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 174
Target Start/End: Complemental strand, 21866706 - 21866674
Alignment:
Q  142 attgcagaaaatagcggtttgttcaaatttcac 174  Q
    |||||||||||||||||||||||||||||||||    
T  21866706 attgcagaaaatagcggtttgttcaaatttcac 21866674  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 28976555 - 28976606
Alignment:
Q  191 tttgttcaaattctgctatgctatagcgctatggcaccactattcaacaaca 242  Q
    ||||||||||||| ||||||| |||||||||| ||||||||||| |||||||    
T  28976555 tttgttcaaattccgctatgcaatagcgctatagcaccactatttaacaaca 28976606  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 13380923 - 13380886
Alignment:
Q  185 tagcaatttgttcaaattctgctatgctatagcgctat 222  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  13380923 tagcaatttgttcaaattctactatgctattgcgctat 13380886  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 4145300 - 4145356
Alignment:
Q  188 caatttgttcaaattctgctatgctatagcgctatggcaccactattcaacaacact 244  Q
    |||||||||||||||||||||||||||||| |||| || |  ||||| |||||||||    
T  4145300 caatttgttcaaattctgctatgctatagcactattgcgctgctatttaacaacact 4145356  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 175
Target Start/End: Original strand, 30617205 - 30617238
Alignment:
Q  142 attgcagaaaatagcggtttgttcaaatttcact 175  Q
    ||||||||||||||||||||||||||||| ||||    
T  30617205 attgcagaaaatagcggtttgttcaaattccact 30617238  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 173
Target Start/End: Original strand, 40601812 - 40601857
Alignment:
Q  128 gttgtcaaccgcatattgcagaaaatagcggtttgttcaaatttca 173  Q
    |||||||| | ||||| |||||||||||| ||||||||||||||||    
T  40601812 gttgtcaaacacatatcgcagaaaatagcagtttgttcaaatttca 40601857  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 213
Target Start/End: Complemental strand, 48449193 - 48449164
Alignment:
Q  184 atagcaatttgttcaaattctgctatgcta 213  Q
    ||||||||||||||||||||||||||||||    
T  48449193 atagcaatttgttcaaattctgctatgcta 48449164  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 11570719 - 11570751
Alignment:
Q  190 atttgttcaaattctgctatgctatagcgctat 222  Q
    ||||||||||||||||||||||||||| |||||    
T  11570719 atttgttcaaattctgctatgctatagagctat 11570751  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 215
Target Start/End: Complemental strand, 26555700 - 26555669
Alignment:
Q  184 atagcaatttgttcaaattctgctatgctata 215  Q
    ||||||||||||||||||||||||||||||||    
T  26555700 atagcaatttgttcaaattctgctatgctata 26555669  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 32616812 - 32616847
Alignment:
Q  185 tagcaatttgttcaaattctgctatgctatagcgct 220  Q
    ||||||||||||||||| ||||||||||||||||||    
T  32616812 tagcaatttgttcaaatcctgctatgctatagcgct 32616847  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 11674081 - 11674049
Alignment:
Q  190 atttgttcaaattctgctatgctatagcgctat 222  Q
    ||||||||||||||||||||||||||| |||||    
T  11674081 atttgttcaaattctgctatgctatagtgctat 11674049  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 9153863 - 9153909
Alignment:
Q  188 caatttgttcaaattctgctatgctatagcgctatggcaccactatt 234  Q
    ||||||||||||||| |||||||| |||||||||| || ||||||||    
T  9153863 caatttgttcaaattttgctatgcaatagcgctatagccccactatt 9153909  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 170
Target Start/End: Original strand, 13510221 - 13510266
Alignment:
Q  125 agtgttgtcaaccgcatattgcagaaaatagcggtttgttcaaatt 170  Q
    ||||||||||| |||| || |||||||||||| |||||||||||||    
T  13510221 agtgttgtcaaacgcagatggcagaaaatagcagtttgttcaaatt 13510266  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 21780970 - 21780925
Alignment:
Q  125 agtgttgtcaaccgcatattgcagaaaatagcggtttgttcaaatt 170  Q
    ||||||||||| |||  ||||||||||||||| |||||||||||||    
T  21780970 agtgttgtcaaacgcggattgcagaaaatagcagtttgttcaaatt 21780925  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 175
Target Start/End: Complemental strand, 44460453 - 44460423
Alignment:
Q  145 gcagaaaatagcggtttgttcaaatttcact 175  Q
    |||||||||||||||||||||||||||||||    
T  44460453 gcagaaaatagcggtttgttcaaatttcact 44460423  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 19978403 - 19978371
Alignment:
Q  190 atttgttcaaattctgctatgctatagcgctat 222  Q
    ||||||||||||||||||| |||||||||||||    
T  19978403 atttgttcaaattctgctacgctatagcgctat 19978371  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 30358619 - 30358583
Alignment:
Q  184 atagcaatttgttcaaattctgctatgctatagcgct 220  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  30358619 atagcaatttgttcaaattgtgctacgctatagcgct 30358583  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 219
Target Start/End: Original strand, 41947086 - 41947114
Alignment:
Q  191 tttgttcaaattctgctatgctatagcgc 219  Q
    |||||||||||||||||||||||||||||    
T  41947086 tttgttcaaattctgctatgctatagcgc 41947114  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 5095863 - 5095825
Alignment:
Q  184 atagcaatttgttcaaattctgctatgctatagcgctat 222  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  5095863 atagcaatttgttcaaattctgctatgctagagctctat 5095825  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 218
Target Start/End: Complemental strand, 7347711 - 7347677
Alignment:
Q  184 atagcaatttgttcaaattctgctatgctatagcg 218  Q
    |||||||||||||||||||||||||||| ||||||    
T  7347711 atagcaatttgttcaaattctgctatgcaatagcg 7347677  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 15707579 - 15707619
Alignment:
Q  184 atagcaatttgttcaaattctgctatgctatagcgctatgg 224  Q
    |||||| ||||||||||||| |||||||||||| |||||||    
T  15707579 atagcagtttgttcaaattccgctatgctatagtgctatgg 15707619  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 24781195 - 24781228
Alignment:
Q  187 gcaatttgttcaaattctgctatgctatagcgct 220  Q
    ||||||||||||||||| ||||||||||||||||    
T  24781195 gcaatttgttcaaattcagctatgctatagcgct 24781228  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 175
Target Start/End: Original strand, 31696638 - 31696671
Alignment:
Q  142 attgcagaaaatagcggtttgttcaaatttcact 175  Q
    ||||||||||||||||||||||||||||| ||||    
T  31696638 attgcagaaaatagcggtttgttcaaattccact 31696671  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 2457357 - 2457313
Alignment:
Q  126 gtgttgtcaaccgcatattgcagaaaatagcggtttgttcaaatt 170  Q
    |||||||||| |||| || |||||||||||| |||||||||||||    
T  2457357 gtgttgtcaatcgcagatcgcagaaaatagcagtttgttcaaatt 2457313  T

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