View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1419_low_13 (Length: 296)
Name: NF1419_low_13
Description: NF1419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1419_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 279
Target Start/End: Original strand, 36748946 - 36749212
Alignment:
| Q |
13 |
aaaatgaaatgtcagtattacaagctcaattaggtccttaaggatgactannnnnnnccctttggttttaaacaaactagtcttgaatagtttcaaagta |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36748946 |
aaaatgaaatgtcagtattacaagctcaattaggtccttaaggatgactatttttttccctttggttttaaacaaactagtcttgaatagtttcaaagta |
36749045 |
T |
|
| Q |
113 |
ctgttttcttacccaagagacgaggacatgttctccagtgggccgcttaatatcaactggtacacgtcctgttagcaattcgagaagaactacaccgtag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36749046 |
ctgttttcttacccaagagacgaggacatgttctccggtgggccgcttaatatcaactggtacacgtcctgttagtaattcgagaagaactacaccgtag |
36749145 |
T |
|
| Q |
213 |
ctgtaaacatccgactttgtagtaagcttacccgtggaggcatacctacattatcatatccaagtta |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36749146 |
ctgtaaacatccgactttgtagtaagcttacccgtggaggcatacctacattatcatatccaagtta |
36749212 |
T |
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