View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1419_low_16 (Length: 290)

Name: NF1419_low_16
Description: NF1419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1419_low_16
NF1419_low_16
[»] chr2 (9 HSPs)
chr2 (64-282)||(31612911-31613129)
chr2 (192-282)||(31608375-31608465)
chr2 (154-217)||(31605315-31605378)
chr2 (154-282)||(31623784-31623912)
chr2 (154-230)||(31608574-31608647)
chr2 (154-212)||(31619231-31619289)
chr2 (154-281)||(31623932-31624059)
chr2 (184-233)||(31605227-31605276)
chr2 (71-103)||(31619235-31619267)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 64 - 282
Target Start/End: Complemental strand, 31613129 - 31612911
Alignment:
Q  64 ttgctgctggaaagaaaccaatgggtagcacaggaagcgggggattggggcatgaaccaacatcgacaaatgattatgatgatgaacatgacaaaaacaa 163  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31613129 ttgctgctggaaagaaaccgatgggtagcacaggaagcggaggattggggcatgatccaacatcgacaaatgattatgatgatgaacatgacaaaaacaa 31613030  T
Q  164 aacaaaagttcatccaaagaaaccaataggtagcacaggaagcggaggattggggactgatccgcaaacgcataatcctctgctaccaacaaatccacca 263  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31613029 aacaaaagttaatccaaagaaaccaataggtagcacaggaagcggaggattggggactgatccgcaaacgcataatcctctgctaccaacaaatccacca 31612930  T
Q  264 aaaaattctgatgatgatg 282  Q
    |||||||||||||||||||    
T  31612929 aaaaattctgatgatgatg 31612911  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 192 - 282
Target Start/End: Complemental strand, 31608465 - 31608375
Alignment:
Q  192 ggtagcacaggaagcggaggattggggactgatccgcaaacgcataatcctctgctaccaacaaatccaccaaaaaattctgatgatgatg 282  Q
    |||||||||||||||| ||| ||||||||||||||||||| | | ||||||| ||||||||||||||||||||||||||||||||||||||    
T  31608465 ggtagcacaggaagcgaaggtttggggactgatccgcaaatggagaatcctcagctaccaacaaatccaccaaaaaattctgatgatgatg 31608375  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 154 - 217
Target Start/End: Complemental strand, 31605378 - 31605315
Alignment:
Q  154 acaaaaacaaaacaaaagttcatccaaagaaaccaataggtagcacaggaagcggaggattggg 217  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||    
T  31605378 acaaaaacaaaacaaaagttgatcgaaagaaaccaataggtagcacaggaggcggaggattggg 31605315  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 282
Target Start/End: Complemental strand, 31623912 - 31623784
Alignment:
Q  154 acaaaaacaaaacaaaagttcatccaaagaaaccaataggtagcacaggaagcggaggattggggactgatccgcaaacgcataatcctctgctaccaac 253  Q
    |||||| |||||| ||||||  || || |||||||  ||||||||||||  | |||||||||||||||| ||| || ||| ||| | |   ||||||||     
T  31623912 acaaaaccaaaaccaaagttggtcgaaggaaaccaccaggtagcacaggtggaggaggattggggactggtccacacacgaatattacaaagctaccaaa 31623813  T
Q  254 aaatccaccaaaaaattctgatgatgatg 282  Q
    ||||||||||||| |||||||||||||||    
T  31623812 aaatccaccaaaagattctgatgatgatg 31623784  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 31608647 - 31608574
Alignment:
Q  154 acaaaaacaaaacaaaagttcatccaaagaaaccaataggtagcacaggaagcggaggattggggactgatccgcaa 230  Q
    |||||||||||||||||||| || ||| ||||||||||| |||  |||||   ||||||||||||||||||||||||    
T  31608647 acaaaaacaaaacaaaagtttatgcaatgaaaccaatagttagaccagga---ggaggattggggactgatccgcaa 31608574  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 31619289 - 31619231
Alignment:
Q  154 acaaaaacaaaacaaaagttcatccaaagaaaccaataggtagcacaggaagcggagga 212  Q
    ||||||||||||||||||||  |  |||||||||||| |||||||||||||||||||||    
T  31619289 acaaaaacaaaacaaaagttgttggaaagaaaccaatgggtagcacaggaagcggagga 31619231  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 281
Target Start/End: Complemental strand, 31624059 - 31623932
Alignment:
Q  154 acaaaaacaaaacaaaagttcatccaaagaaaccaataggtagcacaggaagcggaggattggggactgatccgcaaacgcataatcctctgctaccaac 253  Q
    ||||||||||||||||||||  |  |||||||||||  ||||| | ||||||  ||||||||||||||| |||  ||||| | ||| ||| |  |  |||    
T  31624059 acaaaaacaaaacaaaagttgttggaaagaaaccaacgggtaggaaaggaagaagaggattggggactggtccaaaaacggagaatgctcagggaataac 31623960  T
Q  254 aaatccaccaaaaaattctgatgatgat 281  Q
    || ||||||||||| |||||||||||||    
T  31623959 aattccaccaaaaacttctgatgatgat 31623932  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 31605276 - 31605227
Alignment:
Q  184 aaccaataggtagcacaggaagcggaggattggggactgatccgcaaacg 233  Q
    ||||||| |||||||||||||||||||||  |||||||||| ||||||||    
T  31605276 aaccaatgggtagcacaggaagcggaggaaaggggactgatgcgcaaacg 31605227  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 31619267 - 31619235
Alignment:
Q  71 tggaaagaaaccaatgggtagcacaggaagcgg 103  Q
    |||||||||||||||||||||||||||||||||    
T  31619267 tggaaagaaaccaatgggtagcacaggaagcgg 31619235  T

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