View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1419_low_20 (Length: 282)

Name: NF1419_low_20
Description: NF1419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1419_low_20
NF1419_low_20
[»] chr4 (6 HSPs)
chr4 (54-263)||(49114016-49114226)
chr4 (136-201)||(34716402-34716467)
chr4 (1-34)||(49113964-49113997)
chr4 (135-173)||(8472547-8472586)
chr4 (154-194)||(6277508-6277548)
chr4 (142-182)||(46685245-46685285)
[»] chr6 (8 HSPs)
chr6 (133-171)||(13375274-13375312)
chr6 (111-199)||(13314262-13314350)
chr6 (133-199)||(11773982-11774048)
chr6 (110-173)||(5548808-5548871)
chr6 (132-199)||(11772363-11772430)
chr6 (133-199)||(13331491-13331557)
chr6 (132-193)||(25048886-25048947)
chr6 (135-199)||(13342443-13342507)
[»] chr1 (4 HSPs)
chr1 (128-182)||(48835856-48835910)
chr1 (143-191)||(43049445-43049494)
chr1 (132-173)||(596324-596366)
chr1 (131-172)||(14703019-14703060)
[»] scaffold0392 (1 HSPs)
scaffold0392 (133-173)||(2053-2094)
[»] chr8 (1 HSPs)
chr8 (134-178)||(3643720-3643765)
[»] chr5 (1 HSPs)
chr5 (133-161)||(10214065-10214093)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 54 - 263
Target Start/End: Original strand, 49114016 - 49114226
Alignment:
Q  54 aggtgctaggtagtaaagaatataattccgtgcatgtttgggagaacactagaatagacaaaatcaccgtgaatcactatgattttggcaaaagctacac 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  49114016 aggtgctaggtagtaaagaatataattccgtgcatgtttgggagaacactagaatagacaaaatcaccgtgaatcactatgattttgggaaaagctacac 49114115  T
Q  154 tttgtagcttcacaaaatcatggtggctcgccgtgatttttcaatcccttcactcatgcaaacatgtacttcctaattgagcttaatttatggatag-tt 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  49114116 tttgtagcttcacaaaatcatggtggctcgccgtgatttttcaatcccttcactcatgcaaacatgtacttcctaattgagcttaatttatggatagttt 49114215  T
Q  253 ttggaattgtg 263  Q
    |||||||||||    
T  49114216 ttggaattgtg 49114226  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 34716467 - 34716402
Alignment:
Q  136 ttttggcaaaagctacactttgtagcttcacaaaatcatggtggctcgccgtgatttttcaatccc 201  Q
    |||||||||||||||| ||||| ||||||||| ||||||||||| || ||||||||||||||||||    
T  34716467 ttttggcaaaagctaccctttgcagcttcacacaatcatggtggttcaccgtgatttttcaatccc 34716402  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 49113964 - 49113997
Alignment:
Q  1 caaatgcaaataattcaacagaggaaaacatgtg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  49113964 caaatgcaaataattcaacagaggaaaacatgtg 49113997  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 8472547 - 8472586
Alignment:
Q  135 attttggcaaaagctacactttgtagcttc-acaaaatca 173  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  8472547 attttggcaaaagctacactttgtagcttcaacaaaatca 8472586  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 6277548 - 6277508
Alignment:
Q  154 tttgtagcttcacaaaatcatggtggctcgccgtgattttt 194  Q
    |||||||||| ||||||||| |||||||| |||||||||||    
T  6277548 tttgtagctttacaaaatcagggtggctcaccgtgattttt 6277508  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 46685285 - 46685245
Alignment:
Q  142 caaaagctacactttgtagcttcacaaaatcatggtggctc 182  Q
    ||||||||||||||||||||||  |||||||| ||||||||    
T  46685285 caaaagctacactttgtagctttgcaaaatcacggtggctc 46685245  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 13375274 - 13375312
Alignment:
Q  133 tgattttggcaaaagctacactttgtagcttcacaaaat 171  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13375274 tgattttggcaaaagctacactttgtagcttcacaaaat 13375312  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 199
Target Start/End: Complemental strand, 13314350 - 13314262
Alignment:
Q  111 acaaaatcaccgtgaatcactatgattttggcaaaagctacactttgtagcttcacaaaatcatggtggctcgccgtgatttttcaatc 199  Q
    |||||||||  |||| |||| |||||  |||||||||||||||||| ||||||||| |||| | ||||||||   ||||||||||||||    
T  13314350 acaaaatcaaagtgagtcaccatgatcctggcaaaagctacactttatagcttcaccaaattacggtggctcagtgtgatttttcaatc 13314262  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 11774048 - 11773982
Alignment:
Q  133 tgattttggcaaaagctacactttgtagcttcacaaaatcatggtggctcgccgtgatttttcaatc 199  Q
    |||||||||||| ||||||||| ||||||||||||||||   |||||||| || | |||||||||||    
T  11774048 tgattttggcaatagctacactctgtagcttcacaaaattgcggtggctcaccataatttttcaatc 11773982  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 173
Target Start/End: Original strand, 5548808 - 5548871
Alignment:
Q  110 gacaaaatcaccgtgaatcactatgattttggcaaaagctacactttgtagcttcacaaaatca 173  Q
    ||||||||||| ||||||| |  |||||||||| |||||||||||||  |||||| ||||||||    
T  5548808 gacaaaatcacggtgaatcgccttgattttggctaaagctacacttttgagcttcccaaaatca 5548871  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 11772363 - 11772430
Alignment:
Q  132 atgattttggcaaaagctacactttgtagcttcacaaaatcatggtggctcgccgtgatttttcaatc 199  Q
    ||||||||||| | |||||||||||||| ||||||||||| | ||||||||  | | |||||||||||    
T  11772363 atgattttggcgatagctacactttgtaacttcacaaaattacggtggctcagcataatttttcaatc 11772430  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 13331557 - 13331491
Alignment:
Q  133 tgattttggcaaaagctacactttgtagcttcacaaaatcatggtggctcgccgtgatttttcaatc 199  Q
    |||||||||| | |||||||||||| |||||||||| || | ||||||||| | | |||||||||||    
T  13331557 tgattttggcgatagctacactttgaagcttcacaatattacggtggctcgacataatttttcaatc 13331491  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 25048886 - 25048947
Alignment:
Q  132 atgattttggcaaaagctacactttgtagcttcacaaaatcatggtggctcgccgtgatttt 193  Q
    ||||||||| |||||| |||||| ||||| |||||||||||| ||||  || ||||||||||    
T  25048886 atgattttgacaaaagttacactctgtagtttcacaaaatcacggtgattcaccgtgatttt 25048947  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 13342507 - 13342443
Alignment:
Q  135 attttggcaaaagctacactttgtagcttcacaaaatcatggtggctcgccgtgatttttcaatc 199  Q
    |||||||| | || ||||||||||||||||||||||| | ||||| ||| | | |||||||||||    
T  13342507 attttggcgatagatacactttgtagcttcacaaaattacggtggttcggcataatttttcaatc 13342443  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 48835856 - 48835910
Alignment:
Q  128 cactatgattttggcaaaagctacactttgtagcttcacaaaatcatggtggctc 182  Q
    |||||||||||| |||||||||| ||||| |||||||||||||||| ||||||||    
T  48835856 cactatgattttagcaaaagctaaactttatagcttcacaaaatcacggtggctc 48835910  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 43049445 - 43049494
Alignment:
Q  143 aaaagctacactttgtagcttc-acaaaatcatggtggctcgccgtgatt 191  Q
    ||||||||||||||||||||||  |||||||||||||| |||||||||||    
T  43049445 aaaagctacactttgtagcttctgcaaaatcatggtgggtcgccgtgatt 43049494  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 596324 - 596366
Alignment:
Q  132 atgattttggcaaaagctacactttgtagcttc-acaaaatca 173  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  596324 atgattttggcaaaagctacactttgtggcttcgacaaaatca 596366  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 14703019 - 14703060
Alignment:
Q  131 tatgattttggcaaaagctacactttgtagcttcacaaaatc 172  Q
    |||||||||| ||||| |||||||||||||||||||| ||||    
T  14703019 tatgattttgtcaaaaactacactttgtagcttcacataatc 14703060  T

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Target: scaffold0392 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0392
Description:

Target: scaffold0392; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 2094 - 2053
Alignment:
Q  133 tgattttggcaaaagctacactttgtagcttc-acaaaatca 173  Q
    ||||||| |||||||||||||||||||||||| |||||||||    
T  2094 tgattttcgcaaaagctacactttgtagcttcaacaaaatca 2053  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 3643720 - 3643765
Alignment:
Q  134 gattttggcaaaagctacactttgtagcttc-acaaaatcatggtg 178  Q
    |||||| |||||||||||||||||||||||| | ||||||||||||    
T  3643720 gatttttgcaaaagctacactttgtagcttcaataaaatcatggtg 3643765  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 161
Target Start/End: Complemental strand, 10214093 - 10214065
Alignment:
Q  133 tgattttggcaaaagctacactttgtagc 161  Q
    |||||||||||||||||||||||||||||    
T  10214093 tgattttggcaaaagctacactttgtagc 10214065  T

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