View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1419_low_21 (Length: 268)
Name: NF1419_low_21
Description: NF1419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1419_low_21 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 1743707 - 1743440
Alignment:
| Q |
1 |
catcaaatttcacaatctgggttggacctagatttgattaatctttccaaccaaagaacacttcctgttgatggattgcgagaactcggtacaaagatga |
100 |
Q |
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| T |
1743707 |
catcaaatttcacaatctgggttggaccttgatttgattaatctttccaaccaaagaacacttcctgttgatggattgcgagaactcggtacaaagatga |
1743608 |
T |
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| Q |
101 |
taaacttgagggttttgatttgctcaaacattggctctcttcgcgatagccatctggtagtgatagcttattgtttcccatttcttgaagagcttgatat |
200 |
Q |
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| T |
1743607 |
taaacttgagggttttgatttgctcgaacgttggatctcttcgcgatagccatctggtagtgatagcttattgctttccatttcttgaagagcttgacat |
1743508 |
T |
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| Q |
201 |
tagctttcctttggattctcaagcatctgattttggattactaaggctatcttccatgcttgagaatc |
268 |
Q |
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| T |
1743507 |
tagctttcctttggattctcaagcatctgattttggattactaaggctgtcttccatgcttgagaatc |
1743440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 2006675 - 2006942
Alignment:
| Q |
1 |
catcaaatttcacaatctgggttggacctagatttgattaatctttccaaccaaagaacacttcctgttgatggattgcgagaactcggtacaaagatga |
100 |
Q |
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| T |
2006675 |
catcaagtttcacaatctgggctggaccttgatttcgttaatctttccaaccagagaacagttcctgttgatggattgcgagagctcggttcaaagatga |
2006774 |
T |
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| Q |
101 |
taaacttgagggttttgatttgctcaaacattggctctcttcgcgatagccatctggtagtgatagcttattgtttcccatttcttgaagagcttgatat |
200 |
Q |
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| T |
2006775 |
taaacctgagggttttgatttgctcaaacattggctctctttgcgatagccatctggtagtgatagcttattgctttccatttcttgaagagcttgacat |
2006874 |
T |
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| Q |
201 |
tagctttcctttggattctcaagcatctgattttggattactaaggctatcttccatgcttgagaatc |
268 |
Q |
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| T |
2006875 |
tagctttcctttggattctcaagcatctgattttggattaataaggtaatcttccatgctcgagaatc |
2006942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 1749055 - 1749015
Alignment:
| Q |
45 |
ttccaaccaaagaacacttcctgttgatggattgcgagaac |
85 |
Q |
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| T |
1749055 |
ttccaaccagagaacacttccccttgatggattgcgagaac |
1749015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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