View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1419_low_26 (Length: 250)
Name: NF1419_low_26
Description: NF1419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1419_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 15008217 - 15008098
Alignment:
| Q |
1 |
ttggaggagttgaaacttactaattgcgagaaactgatagatattccaggtctcgaatgcttgaaatccttgagaaggttcttatcttcttctttttgcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15008217 |
ttggaggagttgaaacttactaattgcgagaaactgatagatattccaggtctcgaatgcttgaaatccttgagaaggttcttatcttcttctttttgcc |
15008118 |
T |
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| Q |
101 |
cataaatcctgatacagtga |
120 |
Q |
| |
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|||||||||||||||||||| |
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| T |
15008117 |
cataaatcctgatacagtga |
15008098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 15022334 - 15022215
Alignment:
| Q |
1 |
ttggaggagttgaaacttactaattgcgagaaactgatagatattccaggtctcgaatgcttgaaatccttgagaaggttcttatcttcttctttttgcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15022334 |
ttggaggagttgaaacttactaattgcgagaaactgatagatattccaggtctcgaatgcttgaaatccttgagaaggttcttatcttcttctttttgcc |
15022235 |
T |
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| Q |
101 |
cataaatcctgatacagtga |
120 |
Q |
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|||||||||||||||||||| |
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| T |
15022234 |
cataaatcctgatacagtga |
15022215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 15029515 - 15029440
Alignment:
| Q |
1 |
ttggaggagttgaaacttactaattgcgagaaactgatagatattccaggtctcgaatgcttgaaatccttgagaa |
76 |
Q |
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||||||||||||||| | || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
15029515 |
ttggaggagttgaaattcacaaattgcgagaaactgatagatattctaggtctcgaatgcttgaaatccttgagaa |
15029440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 15008031 - 15007982
Alignment:
| Q |
187 |
gtaggtggattgaactttattttccttgcaacttacttccagatgctatt |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15008031 |
gtaggtggattgaactttattttccttgcaacttacttccagatgctatt |
15007982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 15022148 - 15022099
Alignment:
| Q |
187 |
gtaggtggattgaactttattttccttgcaacttacttccagatgctatt |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15022148 |
gtaggtggattgaactttattttccttgcaacttacttccagatgctatt |
15022099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 15029275 - 15029223
Alignment:
| Q |
187 |
gtaggtggattgaactttattttccttgcaacttacttccagatgctattcat |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
15029275 |
gtaggtggattgaactttattttccttgcaacttacttccagttcctattcat |
15029223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 15029374 - 15029342
Alignment:
| Q |
88 |
tcttctttttgcccataaatcctgatacagtga |
120 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
15029374 |
tcttctttttgcccataaatcctgatacagtga |
15029342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 25956089 - 25956013
Alignment:
| Q |
1 |
ttggaggagttgaaacttactaattgcgagaaactgatagatattccaggtctcgaatgcttgaaatccttgagaag |
77 |
Q |
| |
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||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25956089 |
ttggaggagttgaaactcacaaattgcaagaaactgatagatattccaggtctcgaatgcttgaaatccttgagaag |
25956013 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 25955957 - 25955912
Alignment:
| Q |
75 |
aaggttcttatcttcttctttttgcccataaatcctgatacagtga |
120 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25955957 |
aaggttcttatcttcttctctttgcccataaatcctgatacagtga |
25955912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 25946729 - 25946665
Alignment:
| Q |
1 |
ttggaggagttgaaacttactaattgcgagaaactgatagatattccaggtctcgaatgcttgaa |
65 |
Q |
| |
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|||||||||||| |||| || |||||||||||| || |||||||||||||| ||||||||||| |
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| T |
25946729 |
ttggaggagttggaactcacaaattgcgagaaagtggctgatattccaggtcttgaatgcttgaa |
25946665 |
T |
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