View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1419_low_27 (Length: 250)

Name: NF1419_low_27
Description: NF1419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1419_low_27
NF1419_low_27
[»] chr2 (6 HSPs)
chr2 (73-250)||(36338838-36339032)
chr2 (154-250)||(27648486-27648582)
chr2 (12-72)||(36339130-36339187)
chr2 (115-155)||(44686164-44686204)
chr2 (78-112)||(27648394-27648428)
chr2 (78-112)||(44686218-44686252)
[»] chr6 (1 HSPs)
chr6 (127-250)||(353107-353237)
[»] chr3 (3 HSPs)
chr3 (121-250)||(53837432-53837568)
chr3 (152-250)||(53833834-53833932)
chr3 (77-112)||(24734349-24734384)
[»] chr1 (1 HSPs)
chr1 (152-250)||(47833942-47834040)
[»] chr5 (3 HSPs)
chr5 (151-238)||(33827629-33827716)
chr5 (204-247)||(23755661-23755704)
chr5 (204-247)||(23821117-23821160)
[»] chr4 (1 HSPs)
chr4 (151-206)||(54572992-54573047)
[»] chr7 (2 HSPs)
chr7 (77-112)||(4648283-4648318)
chr7 (77-109)||(38787113-38787145)


Alignment Details
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 73 - 250
Target Start/End: Complemental strand, 36339032 - 36338838
Alignment:
Q  73 gaactgactgttgtatcctggagagtactagctatgaga-------ca----gtaacctatccgaggtggcgaaatactcttaagcccg------gtgca 155  Q
    |||||||||||||||||||||||||||||||| | ||||       ||    ||||||||| |||| ||||||||||||||||| || |      |||||    
T  36339032 gaactgactgttgtatcctggagagtactagccacgagatctactgcatcgggtaacctattcgagatggcgaaatactcttaaaccagtgcttcgtgca 36338933  T
Q  156 cgcctcaatcaatatttgataagtttacatattctctattctattgtatttagagttctattaatttgatgctaataattcttgttgtttattac 250  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  36338932 cgcctcagtcaatattcgataagtttacatattctctattctattgtatttagagttctattaatttgatgctaataattcttgctgtctattac 36338838  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 27648486 - 27648582
Alignment:
Q  154 cacgcctcaatcaatatttgataagtttacatattctctattctattgtatttagagttctattaatttgatgctaataattcttgttgtttattac 250  Q
    |||||||||||||||| | ||||||||||| | |||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||  |||||||    
T  27648486 cacgcctcaatcaataatcgataagtttacttgttctctattctattatatttagagctctattaatttgatgctaatatttcttgttacttattac 27648582  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 36339187 - 36339130
Alignment:
Q  12 atagggatacgtaagttacattgagagagaacaaacttgttagatgctttcatctcttctt 72  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  36339187 atagggatacgtaagttacattgagagagaaca---ttgttagatgctttcatctcttctt 36339130  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 44686204 - 44686164
Alignment:
Q  115 taacctatccgaggtggcgaaatactcttaagcccggtgca 155  Q
    |||| |||||||||||||||||||||||||||||| |||||    
T  44686204 taacttatccgaggtggcgaaatactcttaagcccagtgca 44686164  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 112
Target Start/End: Original strand, 27648394 - 27648428
Alignment:
Q  78 gactgttgtatcctggagagtactagctatgagac 112  Q
    |||||||||||||||||||||| ||||||||||||    
T  27648394 gactgttgtatcctggagagtattagctatgagac 27648428  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 112
Target Start/End: Complemental strand, 44686252 - 44686218
Alignment:
Q  78 gactgttgtatcctggagagtactagctatgagac 112  Q
    |||||||||||||||||||||| ||||||||||||    
T  44686252 gactgttgtatcctggagagtattagctatgagac 44686218  T

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Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 127 - 250
Target Start/End: Original strand, 353107 - 353237
Alignment:
Q  127 ggtggcgaaatactcttaagcccggtgc-------acgcctcaatcaatatttgataagtttacatattctctattctattgtatttagagttctattaa 219  Q
    ||||||||||||||||||||||| ||||       |||||||| |||||| | ||| ||||||| ||||||||||||||||||||||||| |||||||||    
T  353107 ggtggcgaaatactcttaagcccagtgcttcgtgcacgcctcagtcaataatcgatgagtttacttattctctattctattgtatttagaattctattaa 353206  T
Q  220 tttgatgctaataattcttgttgtttattac 250  Q
    ||||||||||||| |||||||||||||||||    
T  353207 tttgatgctaatatttcttgttgtttattac 353237  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 121 - 250
Target Start/End: Complemental strand, 53837568 - 53837432
Alignment:
Q  121 atccgaggtggcgaaatactcttaagcccggt-------gcacgcctcaatcaatatttgataagtttacatattctctattctattgtatttagagttc 213  Q
    |||||||||||||||||||||||||||||  |       |||||||||| |||||| | ||||||||||| | |||||||||||||| | ||||||||||    
T  53837568 atccgaggtggcgaaatactcttaagcccaatacttcatgcacgcctcagtcaataatcgataagtttacttgttctctattctattatgtttagagttc 53837469  T
Q  214 tattaatttgatgctaataattcttgttgtttattac 250  Q
    ||||||||||||||||||| ||||| ||| |||||||    
T  53837468 tattaatttgatgctaatatttcttattgcttattac 53837432  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 152 - 250
Target Start/End: Complemental strand, 53833932 - 53833834
Alignment:
Q  152 tgcacgcctcaatcaatatttgataagtttacatattctctattctattgtatttagagttctattaatttgatgctaataattcttgttgtttattac 250  Q
    |||||||||||| ||||| | ||||||||||  | ||||||||| |||| ||||||||||||||||||||||||| ||||| ||||| ||| |||||||    
T  53833932 tgcacgcctcaaccaataatcgataagtttagttgttctctattatattatatttagagttctattaatttgatgttaatatttcttattgcttattac 53833834  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 112
Target Start/End: Complemental strand, 24734384 - 24734349
Alignment:
Q  77 tgactgttgtatcctggagagtactagctatgagac 112  Q
    ||||||||||||||||||||||| ||||||||||||    
T  24734384 tgactgttgtatcctggagagtattagctatgagac 24734349  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 152 - 250
Target Start/End: Original strand, 47833942 - 47834040
Alignment:
Q  152 tgcacgcctcaatcaatatttgataagtttacatattctctattctattgtatttagagttctattaatttgatgctaataattcttgttgtttattac 250  Q
    |||| |||||| |||||| | ||||||||||| | |||||||||||||| ||||||||| ||||||||||||||||||||| |||| |||  |||||||    
T  47833942 tgcatgcctcagtcaataatcgataagtttacttgttctctattctattatatttagagatctattaatttgatgctaatatttctcgttacttattac 47834040  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 238
Target Start/End: Original strand, 33827629 - 33827716
Alignment:
Q  151 gtgcacgcctcaatcaatatttgataagtttacatattctctattctattgtatttagagttctattaatttgatgctaataattctt 238  Q
    |||||||||||| |||||    ||||| ||||| | |||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  33827629 gtgcacgcctcagtcaatgaccgataaatttacttgttctctattctattatatttagagttctattaatttgatgctaatatttctt 33827716  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 23755704 - 23755661
Alignment:
Q  204 tttagagttctattaatttgatgctaataattcttgttgtttat 247  Q
    ||||||||| |||||||||||| || ||||||||||||||||||    
T  23755704 tttagagttgtattaatttgatactgataattcttgttgtttat 23755661  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 23821160 - 23821117
Alignment:
Q  204 tttagagttctattaatttgatgctaataattcttgttgtttat 247  Q
    ||||||||| |||||||||||| || ||||||||||||||||||    
T  23821160 tttagagttgtattaatttgatactgataattcttgttgtttat 23821117  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 54572992 - 54573047
Alignment:
Q  151 gtgcacgcctcaatcaatatttgataagtttacatattctctattctattgtattt 206  Q
    |||||||||||| |||||| | ||||||||||| ||||||||||||||||||||||    
T  54572992 gtgcacgcctcagtcaataatcgataagtttacttattctctattctattgtattt 54573047  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 112
Target Start/End: Complemental strand, 4648318 - 4648283
Alignment:
Q  77 tgactgttgtatcctggagagtactagctatgagac 112  Q
    |||||||||||||||| |||||||||||||||||||    
T  4648318 tgactgttgtatcctgaagagtactagctatgagac 4648283  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 38787113 - 38787145
Alignment:
Q  77 tgactgttgtatcctggagagtactagctatga 109  Q
    |||||||||||||||||||||||||| ||||||    
T  38787113 tgactgttgtatcctggagagtactaactatga 38787145  T

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