View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1419_low_28 (Length: 250)
Name: NF1419_low_28
Description: NF1419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1419_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 21579828 - 21580066
Alignment:
| Q |
1 |
catttctctatcaacaaatccttagcaaaatcaagacccttgttagatataacaccagagatgaaaccatcttcaaagggttgaacatagccacttgttg |
100 |
Q |
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| T |
21579828 |
catttctctatcaacaaatccttagcaaaatcaagacccttgttagatataacaccagagatgaaaccatctttaaagggttgaacatagccactagttg |
21579927 |
T |
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| Q |
101 |
gaattaataaaaggtataatagaaagaagagattcaagagtgtcattag-nnnnnnnaaaagtgttgtttgttggagattggtttgtagaattggttacg |
199 |
Q |
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| T |
21579928 |
gaattaatataaggtgtaatagaaagaatagattcaagagtgtcattagttttttttgaaagtgttgtttgttggagattggtttgtggaattggttacg |
21580027 |
T |
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| Q |
200 |
taggtatgagtaattggttggtgttggaatttagatttt |
238 |
Q |
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| T |
21580028 |
taggtatgaagaattggttggtgttggaatttagatttt |
21580066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 3 - 149
Target Start/End: Original strand, 21576213 - 21576359
Alignment:
| Q |
3 |
tttctctatcaacaaatccttagcaaaatcaagacccttgttagatataacaccagagatgaaaccatcttcaaagggttgaacatagccacttgttgga |
102 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| | | | |||||||| |
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| T |
21576213 |
tttctctatcaacaaatccttagcaaaatcaagacctttgttggatataacaccagagatgaaaccatcttcaaagggttggttagaagcgattgttgga |
21576312 |
T |
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| Q |
103 |
attaataaaaggtataatagaaagaagagattcaagagtgtcattag |
149 |
Q |
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| T |
21576313 |
attaatagaaggtgtgatagaaagaagagattcaagagtttcattag |
21576359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 21576400 - 21576473
Alignment:
| Q |
168 |
ttgttggagatt--ggtttgtagaa-ttggttacgtaggtatgagtaattggttggtgttggaatttagatttt |
238 |
Q |
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| T |
21576400 |
ttgttggagattttggtttgtagaaattggttacgtaggtataaggaattggttggtgttggaatttggatttt |
21576473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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