View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1419_low_3 (Length: 429)

Name: NF1419_low_3
Description: NF1419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1419_low_3
NF1419_low_3
[»] chr7 (7 HSPs)
chr7 (8-360)||(30279105-30279458)
chr7 (24-97)||(31251788-31251861)
chr7 (46-143)||(5758779-5758876)
chr7 (76-141)||(48693146-48693211)
chr7 (46-121)||(47086879-47086955)
chr7 (74-141)||(3557104-3557170)
chr7 (53-97)||(21346445-21346489)
[»] chr3 (10 HSPs)
chr3 (51-146)||(20844736-20844831)
chr3 (45-98)||(53007027-53007080)
chr3 (17-136)||(42980896-42981013)
chr3 (74-141)||(46786908-46786974)
chr3 (75-121)||(39400132-39400178)
chr3 (45-102)||(41877192-41877249)
chr3 (51-125)||(17647750-17647823)
chr3 (53-98)||(15513425-15513470)
chr3 (77-141)||(18360068-18360131)
chr3 (75-135)||(52204768-52204827)
[»] chr8 (5 HSPs)
chr8 (45-125)||(32049067-32049147)
chr8 (46-125)||(38276396-38276475)
chr8 (51-125)||(10177150-10177223)
chr8 (75-144)||(5995202-5995270)
chr8 (59-99)||(37616263-37616303)
[»] chr5 (5 HSPs)
chr5 (73-144)||(35446951-35447021)
chr5 (22-96)||(8463002-8463076)
chr5 (75-145)||(9828284-9828353)
chr5 (75-144)||(37442504-37442570)
chr5 (35-99)||(35908302-35908364)
[»] scaffold0219 (1 HSPs)
scaffold0219 (24-125)||(13356-13456)
[»] chr6 (3 HSPs)
chr6 (24-125)||(26219814-26219916)
chr6 (75-141)||(28992363-28992428)
chr6 (76-144)||(7271651-7271717)
[»] chr2 (9 HSPs)
chr2 (19-102)||(17296664-17296747)
chr2 (45-106)||(18694419-18694480)
chr2 (84-144)||(14994746-14994805)
chr2 (76-144)||(36184327-36184394)
chr2 (74-125)||(44723708-44723759)
chr2 (73-141)||(29191785-29191852)
chr2 (74-144)||(22296872-22296941)
chr2 (56-98)||(30481656-30481698)
chr2 (45-125)||(190176-190256)
[»] chr1 (14 HSPs)
chr1 (76-144)||(44061376-44061443)
chr1 (46-125)||(5953347-5953426)
chr1 (67-141)||(35938326-35938399)
chr1 (75-135)||(622845-622904)
chr1 (74-126)||(27663934-27663985)
chr1 (45-97)||(1031157-1031209)
chr1 (75-143)||(43908994-43909061)
chr1 (56-99)||(25485025-25485068)
chr1 (48-99)||(39126981-39127032)
chr1 (74-144)||(9978895-9978964)
chr1 (75-144)||(50878772-50878840)
chr1 (25-65)||(15691954-15691994)
chr1 (55-95)||(32191217-32191257)
chr1 (88-144)||(51039823-51039878)
[»] chr4 (6 HSPs)
chr4 (48-98)||(43115555-43115605)
chr4 (17-106)||(40981058-40981147)
chr4 (37-106)||(54026960-54027029)
chr4 (19-102)||(54023646-54023729)
chr4 (46-98)||(24254862-24254915)
chr4 (17-62)||(54026971-54027016)
[»] scaffold0229 (1 HSPs)
scaffold0229 (45-97)||(21995-22047)
[»] scaffold0110 (1 HSPs)
scaffold0110 (55-98)||(31357-31400)


Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 8 - 360
Target Start/End: Original strand, 30279105 - 30279458
Alignment:
Q  8 ccaataatattcaacgtgagttaagccacgctcgacattttttaacgtgagttaactcaagttggacatttttcagcgtgagttaactcacgtagacacg 107  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30279105 ccaacaatattcaacgtgagttaagccacgctccacattttttaacgtgagttaactcaagttggacatttttcagcgtgagttaactcacgtagacacg 30279204  T
Q  108 tgaatgagcaaaaacaaatcggagaagatcaattctctatgacc-ttctctagtacacgcaccataaataaaatgacctcaaaggaataaacttattgct 206  Q
    ||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30279205 tgaatgagcaaaaacaaatgggagaagatcaattctctgtgacccttctctagtacacgcaccataaataaaatgacctcaaaggaataaacttattgct 30279304  T
Q  207 tttgtttgtacaaattttgtccttttctaaatgtttgcgtataaatacttaagatcaacttactatagtgttatatcatgcactttgcttatagccaaca 306  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30279305 tttgtttgtacaatttttgtccttttctaaatgtttgcgtataaatacttaagatcaacttactatagtgttatatcatgcactttgcttatagccaaca 30279404  T
Q  307 agctataagtgttatgcaagaaattggaggtttgagattatagagaaaccacac 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30279405 agctataagtgttatgcaagaaattggaggtttgagattatagagaaaccacac 30279458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 31251861 - 31251788
Alignment:
Q  24 tgagttaagccacgctcgacattttttaacgtgagttaactcaagttggacatttttcagcgtgagttaactca 97  Q
    ||||||||  |||||||||| ||||| |||||||||||||||| |||||  |||||||||||||||||||||||    
T  31251861 tgagttaactcacgctcgacttttttcaacgtgagttaactcatgttgggtatttttcagcgtgagttaactca 31251788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 143
Target Start/End: Complemental strand, 5758876 - 5758779
Alignment:
Q  46 tttttaacgtgagttaactcaagttgga-catttttcagcgtgagttaactcacgtagacacgtgaatgagcaaaaacaaatcggagaagatcaattct 143  Q
    |||||||||| |||||||||| ||  |  |||||||||||||||||||||| |||||| |||| |||||||||||||||||  |||||||| |||||||    
T  5758876 tttttaacgtaagttaactcatgtaagtgcatttttcagcgtgagttaactaacgtag-cacgggaatgagcaaaaacaaaagggagaagagcaattct 5758779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 48693211 - 48693146
Alignment:
Q  76 tttttcagcgtgagttaactcacgtagacacgtgaatgagcaaaaacaaatcggagaagatcaatt 141  Q
    ||||||| |||||||||||||||| | ||||||||||||| |||||||||  |||||||| |||||    
T  48693211 tttttcaacgtgagttaactcacgcatacacgtgaatgagtaaaaacaaaagggagaagaacaatt 48693146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 121
Target Start/End: Complemental strand, 47086955 - 47086879
Alignment:
Q  46 tttttaacgtgagttaactcaagttggacattttt-cagcgtgagttaactcacgtagacacgtgaatgagcaaaaa 121  Q
    |||| |||||||||||||||| || ||| |||||| |||||||||||||||||||| | ||||  ||||||||||||    
T  47086955 ttttcaacgtgagttaactcacgtaggatattttttcagcgtgagttaactcacgtgggcacggaaatgagcaaaaa 47086879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 3557170 - 3557104
Alignment:
Q  74 catttttcagcgtgagttaactcacgtagacacgtgaatgagcaaaaacaaatcggagaagatcaatt 141  Q
    ||||||||||||||||||||||||||||| ||||  ||| |||||||| |||| |||||||| |||||    
T  3557170 catttttcagcgtgagttaactcacgtag-cacggtaataagcaaaaataaatgggagaagaacaatt 3557104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 21346445 - 21346489
Alignment:
Q  53 cgtgagttaactcaagttggacatttttcagcgtgagttaactca 97  Q
    |||||||||||||  | | ||||||||||||||||||||||||||    
T  21346445 cgtgagttaactcccgctcgacatttttcagcgtgagttaactca 21346489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 51 - 146
Target Start/End: Complemental strand, 20844831 - 20844736
Alignment:
Q  51 aacgtgagttaactcaagttggacatttttcagcgtgagttaactcacgtagacacgtgaatgagcaaaaacaaatcggagaagatcaattctcta 146  Q
    |||||||||||||| | | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||| ||||    
T  20844831 aacgtgagttaacttacgctggatatttttcagcgtgagttaactcacgtagacacgtgaatgagcaaaaacaaaagggagaagagcaattttcta 20844736  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 53007027 - 53007080
Alignment:
Q  45 ttttttaacgtgagttaactcaagttggacatttttcagcgtgagttaactcac 98  Q
    ||||||||| |||||||||||| |||||||||||||| ||||||||||||||||    
T  53007027 ttttttaacatgagttaactcacgttggacatttttctgcgtgagttaactcac 53007080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 136
Target Start/End: Complemental strand, 42981013 - 42980896
Alignment:
Q  17 ttcaacgtgagttaagccacgctcgacattttttaacgtgagttaactcaagttggacatttttcagcgtgagttaactcacgtagacacgtgaatgagc 116  Q
    ||||||||||| |||  |||| |||||  |||| |||||||||||| ||| || |||||||||| ||| |||| |||||||||||| || | ||||||||    
T  42981013 ttcaacgtgagctaactcacgttcgactattttcaacgtgagttaa-tcacgtaggacattttt-agcatgagctaactcacgtaggcatgagaatgagc 42980916  T
Q  117 aaaaacaaatcggagaagat 136  Q
    |||||||||  |||||||||    
T  42980915 aaaaacaaaagggagaagat 42980896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 46786908 - 46786974
Alignment:
Q  74 catttttcagcgtgagttaactcacgtagacacgtgaatgagcaaaaacaaatcggagaagatcaatt 141  Q
    ||||||||| |||||||||||||| |||| ||| || |||||||||||||||| |||||||| |||||    
T  46786908 catttttcaacgtgagttaactcaagtag-cacatgtatgagcaaaaacaaatgggagaagagcaatt 46786974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 39400132 - 39400178
Alignment:
Q  75 atttttcagcgtgagttaactcacgtagacacgtgaatgagcaaaaa 121  Q
    |||||| ||||||||||||||||||||| |||||||||||| |||||    
T  39400132 attttttagcgtgagttaactcacgtaggcacgtgaatgagaaaaaa 39400178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 41877192 - 41877249
Alignment:
Q  45 ttttttaacgtgagttaactcaagttggacatttttcagcgtgagttaactcacgtag 102  Q
    ||||| ||| ||| |||||||| |||| ||||||||||||||||||||||||| ||||    
T  41877192 tttttcaacatgaattaactcatgttgaacatttttcagcgtgagttaactcatgtag 41877249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 125
Target Start/End: Original strand, 17647750 - 17647823
Alignment:
Q  51 aacgtgagttaactcaagttggacatttttcagcgtgagttaactcacgtagacacgtgaatgagcaaaaacaaa 125  Q
    |||||||||||||||| || ||    |||||| ||||| |||||||||||| ||||| |||||||||||||||||    
T  17647750 aacgtgagttaactcacgtaggtgcattttcaacgtgatttaactcacgta-acacgagaatgagcaaaaacaaa 17647823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 15513425 - 15513470
Alignment:
Q  53 cgtgagttaactcaagttggacatttttcagcgtgagttaactcac 98  Q
    |||||||||||||| ||| ||||||||||| ||||| |||||||||    
T  15513425 cgtgagttaactcacgttcgacatttttcaacgtgaattaactcac 15513470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 18360131 - 18360068
Alignment:
Q  77 ttttcagcgtgagttaactcacgtagacacgtgaatgagcaaaaacaaatcggagaagatcaatt 141  Q
    ||||||||||||||||||| ||||| | ||| ||||||||||||||| ||  ||||||| |||||    
T  18360131 ttttcagcgtgagttaacttacgta-aaacgagaatgagcaaaaacagatgagagaagagcaatt 18360068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 135
Target Start/End: Original strand, 52204768 - 52204827
Alignment:
Q  75 atttttcagcgtgagttaactcacgtagacacgtgaatgagcaaaaacaaatcggagaaga 135  Q
    ||||||||||||| ||||||||||||||  ||  ||||||||||||||| || ||||||||    
T  52204768 atttttcagcgtgggttaactcacgtag-gacaagaatgagcaaaaacatatgggagaaga 52204827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 45 - 125
Target Start/End: Complemental strand, 32049147 - 32049067
Alignment:
Q  45 ttttttaacgtgagttaactcaagttggacatttttcagcgtgagttaactcacgtagacacgtgaatgagcaaaaacaaa 125  Q
    ||||| |||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32049147 tttttcaacgtgagttaacttacgctggacatttttcagcgtgagttaactcacgtagacacgtgaataagcaaaaacaaa 32049067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 46 - 125
Target Start/End: Original strand, 38276396 - 38276475
Alignment:
Q  46 tttttaacgtgagttaactcaagttggacatttttcagcgtgagttaactcacgtagacacgtgaatgagcaaaaacaaa 125  Q
    |||| |||||||||||||||| |  | |||||||||||| |||||| ||||| |||| ||||||||||||||||||||||    
T  38276396 ttttcaacgtgagttaactcacgccgaacatttttcagcatgagttcactcaagtaggcacgtgaatgagcaaaaacaaa 38276475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 51 - 125
Target Start/End: Complemental strand, 10177223 - 10177150
Alignment:
Q  51 aacgtgagttaactcaagttggacatttttcagcgtgagttaactcacgtagacacgtgaatgagcaaaaacaaa 125  Q
    |||||||||||||||| ||||  ||||||||| || |||||||||| ||||| || |||||||||||||||||||    
T  10177223 aacgtgagttaactcacgttgagcatttttcaacgcgagttaactc-cgtaggcatgtgaatgagcaaaaacaaa 10177150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 144
Target Start/End: Original strand, 5995202 - 5995270
Alignment:
Q  75 atttttcagcgtgagttaactcacgtagacacgtgaatgagcaaaaacaaatcggagaagatcaattctc 144  Q
    |||||||||||||||||||||||||| || || |||||||||||||| | || |||||||| ||||||||    
T  5995202 atttttcagcgtgagttaactcacgttga-acatgaatgagcaaaaaaagatgggagaagagcaattctc 5995270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 37616263 - 37616303
Alignment:
Q  59 ttaactcaagttggacatttttcagcgtgagttaactcacg 99  Q
    |||||||| ||| |||||||||||||||| |||||||||||    
T  37616263 ttaactcacgttcgacatttttcagcgtgggttaactcacg 37616303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 73 - 144
Target Start/End: Complemental strand, 35447021 - 35446951
Alignment:
Q  73 acatttttcagcgtgagttaactcacgtagacacgtgaatgagcaaaaacaaatcggagaagatcaattctc 144  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||    
T  35447021 acatttttaagcgtgagttaactcacgtag-cacgtgaatgagcaaaaacaaatgggagaagagcaattctc 35446951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 8463076 - 8463002
Alignment:
Q  22 cgtgagttaagccacgctcgacattttttaacgtgagttaactcaagttggacatttttcagcgtgagttaactc 96  Q
    ||||||||||  |||||||||| ||||| |||||||||||||||| ||||||||||||||||| |||||||||||    
T  8463076 cgtgagttaactcacgctcgacttttttcaacgtgagttaactcaggttggacatttttcagcatgagttaactc 8463002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 145
Target Start/End: Original strand, 9828284 - 9828353
Alignment:
Q  75 atttttcagcgtgagttaactcacgtagacacgtgaatgagcaaaaacaaatcggagaagatcaattctct 145  Q
    ||||||||||||||||||| |||||||||  ||  |||||||||||||  || |||||||| |||||||||    
T  9828284 atttttcagcgtgagttaaatcacgtaga-gcggaaatgagcaaaaactgataggagaagaacaattctct 9828353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 144
Target Start/End: Complemental strand, 37442570 - 37442504
Alignment:
Q  75 atttttcagcgtgagttaactcacgtagacacgtgaatgagcaaaaacaaatcggagaagatcaattctc 144  Q
    ||||||||||||||||||||||| ||||  ||| ||||||||||||||| ||  ||||||| ||||||||    
T  37442570 atttttcagcgtgagttaactcatgtag-gacgggaatgagcaaaaacagat--gagaagaacaattctc 37442504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 35908302 - 35908364
Alignment:
Q  35 acgctcgacattttttaacgtgagttaactcaagttggacatttttcagcgtgagttaactcacg 99  Q
    ||||||||| ||||| || |||||| |||||| ||||||||||||| ||| ||||||||||||||    
T  35908302 acgctcgac-tttttcaatgtgagt-aactcacgttggacattttttagcatgagttaactcacg 35908364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 13356 - 13456
Alignment:
Q  24 tgagttaagccacgctcgacattttttaacgtgagttaactcaagttggacatttttcagcgtgagttaactcacgtagacacgtgaatgagcaaaaaca 123  Q
    ||||||||  |||||||||| ||||||||||||||||| |||| | || |||||||||||| ||||||||||||  |||| |||| |||| |||||||||    
T  13356 tgagttaactcacgctcgac-ttttttaacgtgagttagctcacgctgaacatttttcagcatgagttaactcaactagatacgtaaatgtgcaaaaaca 13454  T
Q  124 aa 125  Q
    ||    
T  13455 aa 13456  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 26219814 - 26219916
Alignment:
Q  24 tgagttaagccacgctcgacattttttaacgtgagttaactcaagttggacattttt--cagcgtgagttaactcacgtagacacgtgaatgagcaaaaa 121  Q
    ||||||||  |||||||||| ||||||||||||| |||||||| | || ||||||||  |||| |||||||||||| |||| ||| ||||||||||||||    
T  26219814 tgagttaactcacgctcgac-ttttttaacgtgaattaactcacgatgaacatttttttcagcatgagttaactcaagtaggcacatgaatgagcaaaaa 26219912  T
Q  122 caaa 125  Q
    ||||    
T  26219913 caaa 26219916  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 28992428 - 28992363
Alignment:
Q  75 atttttcagcgtgagttaactcacgtagacacgtgaatgagcaaaaacaaatcggagaagatcaatt 141  Q
    ||||||||||||||||||||||||||||| | | ||||||| ||||||| || |||||||| |||||    
T  28992428 atttttcagcgtgagttaactcacgtagaga-gggaatgagtaaaaacagatgggagaagagcaatt 28992363  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 7271717 - 7271651
Alignment:
Q  76 tttttcagcgtgagttaactcacgtagacacgtgaatgagcaaaaacaaatcggagaagatcaattctc 144  Q
    |||||||| ||||||||||||| |||| || | |||||||||||||||||| |||||||| ||||||||    
T  7271717 tttttcagtgtgagttaactca-gtag-catgagaatgagcaaaaacaaatgggagaagagcaattctc 7271651  T

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Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 17296747 - 17296664
Alignment:
Q  19 caacgtgagttaagccacgctcgacattttttaacgtgagttaactcaagttggacatttttcagcgtgagttaactcacgtag 102  Q
    ||||||||||||||  ||||||| | ||||| ||||||||||||||||  |||| ||||||||||||||| |||||||| ||||    
T  17296747 caacgtgagttaagttacgctcggcttttttcaacgtgagttaactcacattgggcatttttcagcgtgatttaactcatgtag 17296664  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 18694419 - 18694480
Alignment:
Q  45 ttttttaacgtgagttaactcaagttggacatttttcagcgtgagttaactcacgtagacac 106  Q
    ||||| |||||| ||||||||| | |||||||||||||||||||||||||||||| ||||||    
T  18694419 tttttcaacgtgggttaactcatgctggacatttttcagcgtgagttaactcacgcagacac 18694480  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 14994805 - 14994746
Alignment:
Q  84 cgtgagttaactcacgtagacacgtgaatgagcaaaaacaaatcggagaagatcaattctc 144  Q
    ||||||||||||||||||  |||| |||||||||||||||||| |||||||| ||||||||    
T  14994805 cgtgagttaactcacgtac-cacgggaatgagcaaaaacaaatgggagaagagcaattctc 14994746  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 36184327 - 36184394
Alignment:
Q  76 tttttcagcgtgagttaactcacgtagacacgtgaatgagcaaaaacaaatcggagaagatcaattctc 144  Q
    ||||||||||||||||||||||  ||| |||| |||||||||||||||||| || ||||| ||||||||    
T  36184327 tttttcagcgtgagttaactcatatag-cacgagaatgagcaaaaacaaatgggtgaagagcaattctc 36184394  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 44723708 - 44723759
Alignment:
Q  74 catttttcagcgtgagttaactcacgtagacacgtgaatgagcaaaaacaaa 125  Q
    |||||| |||||| ||||||||||||||| ||||||| ||||||||||||||    
T  44723708 cattttgcagcgtaagttaactcacgtaggcacgtgagtgagcaaaaacaaa 44723759  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 29191852 - 29191785
Alignment:
Q  73 acatttttcagcgtgagttaactcacgtagacacgtgaatgagcaaaaacaaatcggagaagatcaatt 141  Q
    ||||||| |||| ||||||||||||| ||| || | |||||||||||||||||| |||||||| |||||    
T  29191852 acattttgcagcatgagttaactcacatag-catgagaatgagcaaaaacaaatgggagaagagcaatt 29191785  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 22296872 - 22296941
Alignment:
Q  74 catttttcagcgtgagttaactcacgtagacacgtgaatgagcaaaaacaaatcggagaagatcaattctc 144  Q
    ||||||||| |||||||||| | |||| || |||  ||||||||||| ||||| |||||||||||||||||    
T  22296872 catttttcaacgtgagttaagttacgttga-acggaaatgagcaaaatcaaatgggagaagatcaattctc 22296941  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 98
Target Start/End: Original strand, 30481656 - 30481698
Alignment:
Q  56 gagttaactcaagttggacatttttcagcgtgagttaactcac 98  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||    
T  30481656 gagttaactcatgttcgacattttttagcgtgagttaactcac 30481698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 125
Target Start/End: Complemental strand, 190256 - 190176
Alignment:
Q  45 ttttttaacgtgagttaactcaagttggacatttttcagcgtgagttaactcacgtagacacgtgaatgagcaaaaacaaa 125  Q
    ||||| || |||||||||||||  ||  |||||||||| |||||||||| ||| || | |  |||||||||||||||||||    
T  190256 tttttcaatgtgagttaactcacattcaacatttttcatcgtgagttaattcatgttggcgtgtgaatgagcaaaaacaaa 190176  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 44061376 - 44061443
Alignment:
Q  76 tttttcagcgtgagttaactcacgtagacacgtgaatgagcaaaaacaaatcggagaagatcaattctc 144  Q
    |||||||||||||||||||||| |||| |||| |||||||||||||||||  |||||||| ||||||||    
T  44061376 tttttcagcgtgagttaactcatgtag-cacgggaatgagcaaaaacaaacgggagaagagcaattctc 44061443  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 125
Target Start/End: Original strand, 5953347 - 5953426
Alignment:
Q  46 tttttaacgtgagttaactcaagttggacatttttcagcgtgagttaactcacgtagacacgtgaatgagcaaaaacaaa 125  Q
    |||| ||| |||||||||||||| |||||||||||||   ||||||||||||||||| || ||||||||  |||||||||    
T  5953347 ttttcaacttgagttaactcaagctggacatttttcaatatgagttaactcacgtaggcatgtgaatgataaaaaacaaa 5953426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 35938399 - 35938326
Alignment:
Q  67 agttggacatttttcagcgtgagttaactcacgtagacacgtgaatgagcaaaaacaaatcggagaagatcaatt 141  Q
    |||| |||||||||||| ||||||||||| | |||| |||| |||||||||||||||||| |||||||| |||||    
T  35938399 agttagacatttttcagggtgagttaacttatgtag-cacgagaatgagcaaaaacaaatgggagaagagcaatt 35938326  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 622904 - 622845
Alignment:
Q  75 atttttcagcgtgagttaactcacgtagacacgtgaatgagcaaaaacaaatcggagaaga 135  Q
    |||||||| |||||||||||||||||||  ||| |||||||||||||||||| ||||||||    
T  622904 atttttcaacgtgagttaactcacgtag-gacgggaatgagcaaaaacaaatgggagaaga 622845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 27663985 - 27663934
Alignment:
Q  74 catttttcagcgtgagttaactcacgtagacacgtgaatgagcaaaaacaaat 126  Q
    ||||||||||||||||||| ||||||||| |||| ||||||||||||||||||    
T  27663985 catttttcagcgtgagttagctcacgtag-cacgggaatgagcaaaaacaaat 27663934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 1031157 - 1031209
Alignment:
Q  45 ttttttaacgtgagttaactcaagttggacatttttcagcgtgagttaactca 97  Q
    ||||| ||| |||||||||||| | || |||||||||||||||||||||||||    
T  1031157 tttttcaacttgagttaactcacgctgaacatttttcagcgtgagttaactca 1031209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 143
Target Start/End: Complemental strand, 43909061 - 43908994
Alignment:
Q  75 atttttcagcgtgagttaactcacgtagacacgtgaatgagcaaaaacaaatcggagaagatcaattct 143  Q
    ||||||||||||||| ||||||||||||| ||  ||||||||||||||  || |||||||| |||||||    
T  43909061 atttttcagcgtgagataactcacgtaga-acaggaatgagcaaaaactgatgggagaagagcaattct 43908994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 99
Target Start/End: Complemental strand, 25485068 - 25485025
Alignment:
Q  56 gagttaactcaagttggacatttttcagcgtgagttaactcacg 99  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||    
T  25485068 gagttaactcacgttcgacattttccagcgtgagttaactcacg 25485025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 39127032 - 39126981
Alignment:
Q  48 tttaacgtgagttaactcaagttggacatttttcagcgtgagttaactcacg 99  Q
    |||| ||||| |||||||| | | ||||||||||||||||||||||||||||    
T  39127032 tttagcgtgatttaactcacgctcgacatttttcagcgtgagttaactcacg 39126981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 9978895 - 9978964
Alignment:
Q  74 catttttcagcgtgagttaactcacgtagacacgtgaatgagcaaaaacaaatcggagaagatcaattctc 144  Q
    |||||||||| ||||||||||||||||||  | | ||||||||||||| |||| | |||||| ||||||||    
T  9978895 catttttcagtgtgagttaactcacgtag-tatgggaatgagcaaaaataaatggaagaagagcaattctc 9978964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 144
Target Start/End: Original strand, 50878772 - 50878840
Alignment:
Q  75 atttttcagcgtgagttaactcacgtagacacgtgaatgagcaaaaacaaatcggagaagatcaattctc 144  Q
    |||||||||| | || |||||||||||| |||| ||||  |||||||||||| |||||||| ||||||||    
T  50878772 atttttcagcataagataactcacgtag-cacgagaataggcaaaaacaaatgggagaagagcaattctc 50878840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 15691954 - 15691994
Alignment:
Q  25 gagttaagccacgctcgacattttttaacgtgagttaactc 65  Q
    |||||||  |||||||||||||||| |||||||||||||||    
T  15691954 gagttaactcacgctcgacatttttcaacgtgagttaactc 15691994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 32191257 - 32191217
Alignment:
Q  55 tgagttaactcaagttggacatttttcagcgtgagttaact 95  Q
    |||||||||||  ||| ||||||||||||||||||||||||    
T  32191257 tgagttaactctcgttcgacatttttcagcgtgagttaact 32191217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 51039878 - 51039823
Alignment:
Q  88 agttaactcacgtagacacgtgaatgagcaaaaacaaatcggagaagatcaattctc 144  Q
    |||||||||| ||| ||||| |||||||||||||||||| |||| ||| ||||||||    
T  51039878 agttaactcatgta-acacgggaatgagcaaaaacaaataggaggagaacaattctc 51039823  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 43115555 - 43115605
Alignment:
Q  48 tttaacgtgagttaactcaagttggacatttttcagcgtgagttaactcac 98  Q
    |||| |||||||||||| ||||| |||||||||||||||||||||||||||    
T  43115555 tttagcgtgagttaacttaagttcgacatttttcagcgtgagttaactcac 43115605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 40981147 - 40981058
Alignment:
Q  17 ttcaacgtgagttaagccacgctcgacattttttaacgtgagttaactcaagttggacatttttcagcgtgagttaactcacgtagacac 106  Q
    ||||| |||||||||  ||||||| || ||||| ||| ||| |||||| | |||||||| |||| ||||| |||||||||||| ||||||    
T  40981147 ttcaatgtgagttaactcacgctcaacttttttcaacatgatttaacttatgttggacactttttagcgtaagttaactcacgcagacac 40981058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 54026960 - 54027029
Alignment:
Q  37 gctcgacattttttaacgtgagttaactcaagttggacatttttcagcgtgagttaactcacgtagacac 106  Q
    ||||||| ||||| |||||||||||| ||| | ||||||||||| |||||||||||| | | ||||||||    
T  54026960 gctcgacttttttcaacgtgagttaagtcatgctggacattttttagcgtgagttaatttatgtagacac 54027029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 54023646 - 54023729
Alignment:
Q  19 caacgtgagttaagccacgctcgacattttttaacgtgagttaactcaagttggacatttttcagcgtgagttaactcacgtag 102  Q
    |||||||||||||  |||| ||| | ||||| || ||||| ||||||| ||||||||||||| | ||||| |||||||| ||||    
T  54023646 caacgtgagttaactcacgttcggcttttttaaatgtgagataactcatgttggacattttttaacgtgaattaactcatgtag 54023729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 24254915 - 24254862
Alignment:
Q  46 tttttaacgtgagttaactcaagttgg-acatttttcagcgtgagttaactcac 98  Q
    |||||||||||||||||||||||| || | ||||| |||||| |||||||||||    
T  24254915 tttttaacgtgagttaactcaagtgggtatattttgcagcgttagttaactcac 24254862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 54026971 - 54027016
Alignment:
Q  17 ttcaacgtgagttaagccacgctcgacattttttaacgtgagttaa 62  Q
    |||||||||||||||| || ||| ||||||||||| ||||||||||    
T  54026971 ttcaacgtgagttaagtcatgctggacattttttagcgtgagttaa 54027016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 21995 - 22047
Alignment:
Q  45 ttttttaacgtgagttaactcaagttggacatttttcagcgtgagttaactca 97  Q
    ||||| ||| |||||||||||| | || |||||||||||||||||||||||||    
T  21995 tttttcaacttgagttaactcacgctgaacatttttcagcgtgagttaactca 22047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 31357 - 31400
Alignment:
Q  55 tgagttaactcaagttggacatttttcagcgtgagttaactcac 98  Q
    |||||||||||| ||| | |||||||||||||||||||||||||    
T  31357 tgagttaactcacgttcggcatttttcagcgtgagttaactcac 31400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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