View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1419_low_30 (Length: 239)
Name: NF1419_low_30
Description: NF1419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1419_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 17004840 - 17004619
Alignment:
| Q |
1 |
tgaagttgaggttgcgaccaagtttgctgcactaccatggagattaggccgtgaaagtgttctaagtgcacttaaagattcccttgatcgactcgagatg |
100 |
Q |
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| T |
17004840 |
tgaagttgaggttgcgaccaagtttgctgcactaccatggagattaggccgtgaaagtgttctaagtgcacttaaagattcccttgatcgactcgagatg |
17004741 |
T |
|
| Q |
101 |
acttctgtggatctgtatcagcttcattggtctgtatttttagaagtctattgattgatgttgtttttatctaaaagtattgtttttgatgaagtgacac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
17004740 |
acttctgtggatctgtatcagcttcattggtctgtatttttataagtctattgattgatgctgtttttatctaaaaatattgtttttgatgaagtgacac |
17004641 |
T |
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| Q |
201 |
gcttgtttttcaggcctggagt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
17004640 |
gcttgtttttcaggcctggagt |
17004619 |
T |
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