View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1419_low_32 (Length: 232)
Name: NF1419_low_32
Description: NF1419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1419_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 36916250 - 36916049
Alignment:
| Q |
13 |
aatatacttcaagtgcttcctataacgagggttgttcttatttaagcaactatggtgacaaatgcaatcgtgcatgcaaagctgagnnnnnnnnnnnnnn |
112 |
Q |
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| T |
36916250 |
aatatacttcaagtgcttcctataacgagggttgttcttatttaagcaactatggtgacaaatgcaatcgtgcatgcaaagctgagtttttttttttttt |
36916151 |
T |
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| Q |
113 |
nnacaaatgtgaacaaattatcatttttctttacattttttataagcaaatttaacagtccaataatctttaatagaaaatgaggtaaagttatagtggc |
212 |
Q |
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|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36916150 |
t-acaaatatgaacaaattatcatttttctttgcattttttataagcaaatttaacagtccaataatctttaatagaaaatgaggtaaagttatagtggc |
36916052 |
T |
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| Q |
213 |
cct |
215 |
Q |
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||| |
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| T |
36916051 |
cct |
36916049 |
T |
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