View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1419_low_34 (Length: 226)
Name: NF1419_low_34
Description: NF1419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1419_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 33160661 - 33160874
Alignment:
| Q |
1 |
catgtttaacaccaacaccgacatgacattgacacaatgacacatatgaacacattcagtcactttcactttggtatctatatctatgtgtcgtgtccgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
33160661 |
catgtttaacaccaacaccgacatgacattgacacaatgacacatatgaacacattgagtcactttcactttggtatc------tatgtgtcgtgtccgg |
33160754 |
T |
|
| Q |
101 |
tgtttgtgttagtagaaaacctagaaacaaaacccaaatgaattagaaaagaaatttacatggcccaaactcctgctctaggcgaattccaacatagatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33160755 |
tgtttgtgttagtagaaaacctagaaacaaaacccaaatgaattagaaaagaaatttacatggcccaaactcctgctctaggcgaattccaacatagatg |
33160854 |
T |
|
| Q |
201 |
acactgcagagattgatcac |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
33160855 |
acactgcagagattgatcac |
33160874 |
T |
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