View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1419_low_4 (Length: 411)
Name: NF1419_low_4
Description: NF1419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1419_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 34689155 - 34689437
Alignment:
| Q |
1 |
aaactaacaccagaattgcatgctctgtcaatattgtgtgtggccattagagtccctaactagtagcataactttactacttctactctatgcatgcaat |
100 |
Q |
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| T |
34689155 |
aaactaacaccagaattgcatgctctgtcaatattgtgtgtggccattagagtccctaactagtagcataactttactacttctactctatgcatgcaat |
34689254 |
T |
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| Q |
101 |
ctctgcaagtaacaaacaatagagttatattttaactaaaatatttcctaaaatttactatcagaaattattcagaactgaaatatctttctttaatcaa |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34689255 |
ctctgcaagtaacaaacaatagagttacattttaactaaaatatttcttaaaatttactatcagaaattattcagaactgaaatatctttctttaatcaa |
34689354 |
T |
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| Q |
201 |
aactttactaaacaagggaaatctgaaatatatcataaaaatgcagcatggcatgggaattataaattctagtcatccttcct |
283 |
Q |
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| T |
34689355 |
aactttactaaacaagggaaacctgaaatatatcataaaaatgcagcatggcatgggaattataaattctagtcatccttcct |
34689437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 34711567 - 34711849
Alignment:
| Q |
1 |
aaactaacaccagaattgcatgctctgtcaatattgtgtgtggccattagagtccctaactagtagcataactttactacttctactctatgcatgcaat |
100 |
Q |
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| T |
34711567 |
aaactaacaccagaattgcatgctctgtcaatattgtgtgtggccattagagtccctaactagtagcataactttactacttctactctatgcatgcaat |
34711666 |
T |
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| Q |
101 |
ctctgcaagtaacaaacaatagagttatattttaactaaaatatttcctaaaatttactatcagaaattattcagaactgaaatatctttctttaatcaa |
200 |
Q |
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| T |
34711667 |
ctctgcaagtaacaaacaatagagttacattttaactaaaatatttcttaaaatttactatcagaaattattcagaactgaaatatctttctttaatcaa |
34711766 |
T |
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| Q |
201 |
aactttactaaacaagggaaatctgaaatatatcataaaaatgcagcatggcatgggaattataaattctagtcatccttcct |
283 |
Q |
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| T |
34711767 |
aactttactaaacaagggaaacctgaaatatatcataaaaatgcagcatggcatgggaattataaattctagtcatccttcct |
34711849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 311 - 393
Target Start/End: Original strand, 34689465 - 34689547
Alignment:
| Q |
311 |
ttatgtcttttggagtcattatgtacaacctataccacaaaactaatcaagaacttttcagttttattgaaaattaaacattt |
393 |
Q |
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| T |
34689465 |
ttatgtcttttggagtcattatgtacaacctatacgacaaaactaatcaagaacttttcagttttattgaaaattaaacattt |
34689547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 311 - 393
Target Start/End: Original strand, 34711877 - 34711959
Alignment:
| Q |
311 |
ttatgtcttttggagtcattatgtacaacctataccacaaaactaatcaagaacttttcagttttattgaaaattaaacattt |
393 |
Q |
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| T |
34711877 |
ttatgtcttttggagtcattatgtacaacctatacgacaaaactaatcaagaacttttcagttttattgaaaattaaacattt |
34711959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 62 - 147
Target Start/End: Original strand, 16229578 - 16229663
Alignment:
| Q |
62 |
agtagcataactttactacttctactctatgcatgcaatctctgcaagtaacaaacaatagagttatattttaactaaaatatttc |
147 |
Q |
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| T |
16229578 |
agtagcataagtttactacttctactctatgcatgcaatcgctgcaagtaacaaacaatagagttatatttaaattaaaatatttc |
16229663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 34 - 147
Target Start/End: Original strand, 34687071 - 34687184
Alignment:
| Q |
34 |
ttgtgtgtggccattagagtccctaactag--tagcataactttactacttctactctatgcatgcaatctctgcaagtaacaaacaatagagttatatt |
131 |
Q |
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||||||||||||| ||||||||||||||| || ||||| |||||| |||||||||||||||| | |||||| ||||||||||||||| ||||||||| |
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| T |
34687071 |
ttgtgtgtggcca--agagtccctaactagagtatcataagtttacttcttctactctatgcatacgatctctacaagtaacaaacaatcaagttatatt |
34687168 |
T |
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| Q |
132 |
ttaactaaaatatttc |
147 |
Q |
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| T |
34687169 |
ttaatttaaatatttc |
34687184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 34 - 147
Target Start/End: Original strand, 34709483 - 34709596
Alignment:
| Q |
34 |
ttgtgtgtggccattagagtccctaactag--tagcataactttactacttctactctatgcatgcaatctctgcaagtaacaaacaatagagttatatt |
131 |
Q |
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||||||||||||| ||||||||||||||| || ||||| |||||| |||||||||||||||| | |||||| ||||||||||||||| ||||||||| |
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| T |
34709483 |
ttgtgtgtggcca--agagtccctaactagagtatcataagtttacttcttctactctatgcatacgatctctacaagtaacaaacaatcaagttatatt |
34709580 |
T |
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| Q |
132 |
ttaactaaaatatttc |
147 |
Q |
| |
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|||| | ||||||||| |
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| T |
34709581 |
ttaatttaaatatttc |
34709596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 330 - 383
Target Start/End: Complemental strand, 4384452 - 4384399
Alignment:
| Q |
330 |
tatgtacaacctataccacaaaactaatcaagaacttttcagttttattgaaaa |
383 |
Q |
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|||||||||| ||||| |||||| ||||||||||||||||||||||||| |||| |
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| T |
4384452 |
tatgtacaacttatacaacaaaattaatcaagaacttttcagttttattaaaaa |
4384399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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