View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1419_low_5 (Length: 406)

Name: NF1419_low_5
Description: NF1419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1419_low_5
NF1419_low_5
[»] chr7 (24 HSPs)
chr7 (64-205)||(38161007-38161149)
chr7 (33-145)||(19830445-19830559)
chr7 (33-145)||(29100257-29100371)
chr7 (33-144)||(28583464-28583577)
chr7 (33-124)||(19830848-19830939)
chr7 (64-145)||(37786823-37786906)
chr7 (63-179)||(28584294-28584412)
chr7 (64-145)||(19590581-19590664)
chr7 (67-144)||(34534198-34534277)
chr7 (65-145)||(38858700-38858782)
chr7 (34-145)||(2659246-2659359)
chr7 (64-115)||(19590963-19591014)
chr7 (64-145)||(23953135-23953218)
chr7 (64-115)||(29099906-29099957)
chr7 (64-145)||(32005020-32005103)
chr7 (65-144)||(4641497-4641578)
chr7 (63-112)||(4641885-4641934)
chr7 (64-115)||(23952787-23952838)
chr7 (64-115)||(32004670-32004721)
chr7 (64-115)||(35288959-35289010)
chr7 (64-115)||(35289339-35289390)
chr7 (64-115)||(38859079-38859130)
chr7 (64-115)||(2658895-2658946)
chr7 (65-115)||(37787205-37787255)
[»] scaffold1585 (1 HSPs)
scaffold1585 (64-205)||(623-766)
[»] scaffold0432 (1 HSPs)
scaffold0432 (33-144)||(10280-10392)
[»] scaffold0168 (1 HSPs)
scaffold0168 (64-194)||(7645-7777)
[»] chr4 (49 HSPs)
chr4 (65-208)||(48713691-48713834)
chr4 (33-145)||(2118702-2118815)
chr4 (35-151)||(20958261-20958377)
chr4 (33-148)||(45082457-45082572)
chr4 (64-144)||(48526252-48526333)
chr4 (64-145)||(46193811-46193894)
chr4 (33-145)||(43243687-43243800)
chr4 (33-199)||(44892500-44892668)
chr4 (65-145)||(33109741-33109823)
chr4 (66-145)||(22170343-22170424)
chr4 (64-142)||(23494499-23494579)
chr4 (64-145)||(12234385-12234468)
chr4 (64-115)||(15523291-15523342)
chr4 (64-145)||(15523640-15523723)
chr4 (71-145)||(22434584-22434659)
chr4 (64-145)||(25447642-25447725)
chr4 (64-145)||(25937726-25937809)
chr4 (64-145)||(38962225-38962308)
chr4 (33-115)||(18751624-18751706)
chr4 (33-115)||(25447272-25447354)
chr4 (33-115)||(48526619-48526701)
chr4 (66-145)||(4219615-4219696)
chr4 (66-145)||(11153553-11153634)
chr4 (64-142)||(48708351-48708431)
chr4 (64-115)||(12234767-12234818)
chr4 (64-115)||(23494881-23494932)
chr4 (64-115)||(33109902-33109953)
chr4 (64-115)||(45082862-45082913)
chr4 (64-145)||(51020853-51020936)
chr4 (64-115)||(54995125-54995176)
chr4 (26-142)||(16690954-16691072)
chr4 (26-115)||(25938109-25938198)
chr4 (66-145)||(43242328-43242409)
chr4 (64-115)||(20470949-20471000)
chr4 (64-115)||(22434235-22434286)
chr4 (64-115)||(46193461-46193512)
chr4 (33-115)||(11153171-11153253)
chr4 (26-115)||(2118311-2118400)
chr4 (65-115)||(4219997-4220047)
chr4 (77-145)||(12503842-12503912)
chr4 (33-115)||(18763958-18764040)
chr4 (67-145)||(48294948-48295029)
chr4 (279-309)||(48713558-48713588)
chr4 (66-115)||(12503494-12503543)
chr4 (71-142)||(16691481-16691554)
chr4 (70-115)||(35363038-35363083)
chr4 (33-144)||(43281198-43281310)
chr4 (67-115)||(48293653-48293701)
chr4 (64-104)||(51021244-51021284)
[»] chr5 (36 HSPs)
chr5 (33-145)||(15708996-15709109)
chr5 (65-194)||(7349374-7349505)
chr5 (90-194)||(13814087-13814190)
chr5 (33-145)||(14463927-14464040)
chr5 (64-144)||(16018645-16018725)
chr5 (64-145)||(18183375-18183458)
chr5 (64-144)||(164598-164680)
chr5 (33-145)||(29455148-29455262)
chr5 (26-145)||(19359154-19359275)
chr5 (64-145)||(2865161-2865244)
chr5 (64-145)||(5819335-5819418)
chr5 (66-145)||(8647496-8647577)
chr5 (66-173)||(4219721-4219829)
chr5 (64-115)||(2864810-2864861)
chr5 (67-145)||(4623207-4623285)
chr5 (64-115)||(8647876-8647927)
chr5 (64-145)||(14215649-14215732)
chr5 (64-115)||(18183026-18183077)
chr5 (64-145)||(24362242-24362325)
chr5 (64-144)||(8460986-8461068)
chr5 (65-174)||(6019147-6019259)
chr5 (64-115)||(5818985-5819036)
chr5 (64-115)||(15371926-15371977)
chr5 (64-115)||(15372311-15372362)
chr5 (64-115)||(19359574-19359625)
chr5 (68-145)||(25000150-25000229)
chr5 (64-145)||(4222129-4222211)
chr5 (67-199)||(4624577-4624711)
chr5 (65-115)||(8461369-8461419)
chr5 (33-115)||(14215266-14215348)
chr5 (33-150)||(6018339-6018457)
chr5 (64-115)||(29454796-29454847)
chr5 (64-98)||(24331615-24331649)
chr5 (65-115)||(25000527-25000577)
chr5 (64-104)||(164247-164287)
chr5 (66-145)||(24331966-24332049)
[»] chr2 (36 HSPs)
chr2 (33-145)||(7446367-7446480)
chr2 (33-179)||(15551524-15551672)
chr2 (64-145)||(239408-239491)
chr2 (64-145)||(11090577-11090660)
chr2 (64-145)||(20444805-20444888)
chr2 (64-145)||(22374376-22374459)
chr2 (64-145)||(40027196-40027279)
chr2 (33-145)||(14432167-14432281)
chr2 (64-148)||(26538153-26538239)
chr2 (33-145)||(35781069-35781183)
chr2 (26-145)||(1978126-1978247)
chr2 (65-145)||(3025523-3025604)
chr2 (33-144)||(28616638-28616751)
chr2 (64-145)||(40815751-40815834)
chr2 (33-115)||(22374763-22374845)
chr2 (33-115)||(28617052-28617134)
chr2 (65-115)||(28847133-28847183)
chr2 (64-124)||(18450886-18450947)
chr2 (66-145)||(35779766-35779847)
chr2 (66-145)||(43058391-43058472)
chr2 (64-115)||(3025901-3025951)
chr2 (64-115)||(7446784-7446835)
chr2 (33-145)||(8425766-8425880)
chr2 (64-145)||(20440438-20440520)
chr2 (33-115)||(40815370-40815452)
chr2 (26-115)||(1978547-1978636)
chr2 (68-127)||(26538504-26538564)
chr2 (64-115)||(40027578-40027629)
chr2 (112-199)||(2190428-2190516)
chr2 (26-115)||(8425373-8425461)
chr2 (135-199)||(9747636-9747700)
chr2 (64-115)||(239790-239841)
chr2 (64-145)||(8972293-8972376)
chr2 (64-115)||(11090958-11091009)
chr2 (64-145)||(18451237-18451320)
chr2 (33-115)||(14432579-14432661)
[»] chr8 (23 HSPs)
chr8 (64-145)||(41681190-41681272)
chr8 (33-145)||(12571888-12572003)
chr8 (64-145)||(19176696-19176779)
chr8 (64-145)||(31133276-31133359)
chr8 (64-115)||(31133658-31133709)
chr8 (33-115)||(13225077-13225159)
chr8 (65-148)||(44831648-44831733)
chr8 (64-115)||(9928965-9929016)
chr8 (64-115)||(19176346-19176397)
chr8 (64-145)||(33328214-33328297)
chr8 (64-115)||(41681572-41681623)
chr8 (64-144)||(11656511-11656593)
chr8 (65-115)||(12572289-12572339)
chr8 (65-115)||(33328578-33328628)
chr8 (66-145)||(33743325-33743406)
chr8 (64-115)||(4629853-4629904)
chr8 (64-115)||(11656895-11656946)
chr8 (64-145)||(13224696-13224779)
chr8 (64-115)||(44831303-44831354)
chr8 (68-145)||(9178042-9178120)
chr8 (65-115)||(34540986-34541036)
chr8 (64-143)||(9930065-9930146)
chr8 (64-115)||(11336960-11337011)
[»] chr6 (32 HSPs)
chr6 (33-145)||(15828047-15828161)
chr6 (64-145)||(18296201-18296283)
chr6 (26-145)||(31470722-31470843)
chr6 (64-145)||(10900336-10900419)
chr6 (64-194)||(29033490-29033623)
chr6 (33-143)||(2322626-2322738)
chr6 (66-145)||(28472695-28472775)
chr6 (66-145)||(29859884-29859964)
chr6 (64-145)||(2319728-2319811)
chr6 (64-145)||(11276988-11277071)
chr6 (64-145)||(18257193-18257276)
chr6 (64-115)||(10899995-10900046)
chr6 (64-115)||(12935213-12935264)
chr6 (64-115)||(18257575-18257626)
chr6 (64-141)||(18505329-18505408)
chr6 (64-145)||(20741156-20741239)
chr6 (64-115)||(22219791-22219842)
chr6 (64-115)||(23075566-23075617)
chr6 (64-144)||(1149839-1149921)
chr6 (66-115)||(4811694-4811743)
chr6 (66-115)||(11445425-11445474)
chr6 (69-148)||(12935560-12935641)
chr6 (67-148)||(11445046-11445129)
chr6 (33-115)||(11276615-11276697)
chr6 (65-115)||(31470372-31470422)
chr6 (64-105)||(20741552-20741593)
chr6 (67-142)||(3835135-3835212)
chr6 (33-115)||(15827663-15827747)
chr6 (66-115)||(18504977-18505026)
chr6 (64-105)||(23074055-23074096)
chr6 (35-115)||(4811399-4811479)
chr6 (64-150)||(29035038-29035126)
[»] scaffold0176 (2 HSPs)
scaffold0176 (26-145)||(18853-18973)
scaffold0176 (64-105)||(19069-19110)
[»] chr3 (46 HSPs)
chr3 (64-199)||(32697053-32697189)
chr3 (64-145)||(5137036-5137119)
chr3 (64-145)||(37726985-37727068)
chr3 (64-145)||(41046756-41046839)
chr3 (64-145)||(43973497-43973580)
chr3 (33-145)||(25853633-25853747)
chr3 (64-199)||(25612329-25612466)
chr3 (66-145)||(48453047-48453128)
chr3 (33-144)||(17464898-17465012)
chr3 (64-153)||(23228406-23228496)
chr3 (64-134)||(30104538-30104609)
chr3 (64-145)||(31779058-31779141)
chr3 (66-145)||(23644520-23644601)
chr3 (66-145)||(24300962-24301043)
chr3 (63-115)||(22424869-22424921)
chr3 (64-143)||(26274975-26275055)
chr3 (64-115)||(17464547-17464598)
chr3 (64-145)||(22425219-22425302)
chr3 (64-115)||(26274623-26274674)
chr3 (64-145)||(32535365-32535452)
chr3 (64-145)||(39555983-39556066)
chr3 (33-115)||(5137419-5137501)
chr3 (33-115)||(23644903-23644985)
chr3 (66-127)||(27393719-27393781)
chr3 (33-115)||(31778678-31778760)
chr3 (65-115)||(37727368-37727418)
chr3 (33-115)||(43973878-43973960)
chr3 (66-115)||(20840999-20841048)
chr3 (66-145)||(27393983-27394064)
chr3 (66-115)||(32535017-32535066)
chr3 (64-179)||(50116781-50116898)
chr3 (66-139)||(20840618-20840693)
chr3 (64-193)||(25420499-25420630)
chr3 (64-115)||(25853290-25853341)
chr3 (64-115)||(29801412-29801463)
chr3 (64-115)||(29801854-29801905)
chr3 (64-115)||(30098201-30098252)
chr3 (65-115)||(4275802-4275852)
chr3 (65-145)||(37220614-37220696)
chr3 (33-115)||(41047137-41047218)
chr3 (66-115)||(39555636-39555685)
chr3 (64-145)||(51474739-51474823)
chr3 (66-208)||(32695761-32695903)
chr3 (64-115)||(26837416-26837467)
chr3 (67-144)||(26837763-26837842)
chr3 (63-111)||(24300611-24300659)
[»] chr1 (32 HSPs)
chr1 (64-145)||(29869676-29869759)
chr1 (33-145)||(18984144-18984258)
chr1 (33-145)||(29306978-29307092)
chr1 (64-194)||(52268346-52268478)
chr1 (64-145)||(15646601-15646684)
chr1 (64-145)||(50970684-50970767)
chr1 (33-145)||(5540224-5540338)
chr1 (64-115)||(8678597-8678648)
chr1 (64-145)||(26859466-26859548)
chr1 (64-144)||(8678949-8679030)
chr1 (26-115)||(18984557-18984646)
chr1 (64-145)||(9019029-9019112)
chr1 (64-145)||(17433272-17433355)
chr1 (64-115)||(17433653-17433704)
chr1 (64-115)||(21856098-21856149)
chr1 (64-115)||(29307380-29307431)
chr1 (64-145)||(39154075-39154158)
chr1 (33-115)||(29870057-29870139)
chr1 (66-145)||(21856449-21856530)
chr1 (66-115)||(26859117-26859166)
chr1 (64-124)||(33143973-33144034)
chr1 (64-115)||(4636409-4636460)
chr1 (64-115)||(5539872-5539923)
chr1 (64-145)||(5962984-5963067)
chr1 (64-145)||(15173152-15173235)
chr1 (64-115)||(15173532-15173583)
chr1 (64-145)||(33144325-33144408)
chr1 (33-115)||(9019401-9019483)
chr1 (65-115)||(39154458-39154508)
chr1 (65-115)||(50970335-50970385)
chr1 (64-115)||(5962634-5962685)
chr1 (64-115)||(15646248-15646299)
[»] scaffold0027 (2 HSPs)
scaffold0027 (33-145)||(42565-42678)
scaffold0027 (66-115)||(42227-42276)
[»] scaffold0295 (2 HSPs)
scaffold0295 (64-145)||(4849-4932)
scaffold0295 (33-115)||(5229-5311)
[»] scaffold0273 (2 HSPs)
scaffold0273 (64-148)||(4610-4696)
scaffold0273 (64-115)||(4259-4310)
[»] scaffold0007 (2 HSPs)
scaffold0007 (64-145)||(64358-64441)
scaffold0007 (64-115)||(64743-64794)
[»] scaffold1696 (1 HSPs)
scaffold1696 (65-145)||(506-587)
[»] scaffold0417 (2 HSPs)
scaffold0417 (33-144)||(10646-10759)
scaffold0417 (64-115)||(11061-11112)
[»] scaffold1223 (2 HSPs)
scaffold1223 (64-145)||(809-891)
scaffold1223 (64-124)||(1169-1230)
[»] scaffold0951 (2 HSPs)
scaffold0951 (64-145)||(1723-1806)
scaffold0951 (64-115)||(2105-2156)
[»] scaffold0019 (1 HSPs)
scaffold0019 (64-145)||(134079-134162)
[»] scaffold0076 (1 HSPs)
scaffold0076 (33-111)||(8451-8529)
[»] scaffold0113 (1 HSPs)
scaffold0113 (64-179)||(28615-28732)
[»] scaffold0157 (2 HSPs)
scaffold0157 (77-145)||(16565-16635)
scaffold0157 (66-115)||(16934-16983)


Alignment Details
Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 64 - 205
Target Start/End: Original strand, 38161007 - 38161149
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttta-gtcctac-ccccattttatcctccaaaaacacacatgtatcaaatt 161  Q
    |||||||||||| |||||||  |||||||||||||||||||| |||||||||  ||||||| |||||||||||||||||||||| ||||||| ||| |||    
T  38161007 ccttttaaaacagaacaaaattgtccttcaattattatttttgttgcatttttcgtcctactccccattttatcctccaaaaacgcacatgtgtcagatt 38161106  T
Q  162 tttaactgatgtgacaaaaagaacacatatgtgacaattcccac 205  Q
    ||||||||||||| |||||| ||||| |||||| ||||||||||    
T  38161107 tttaactgatgtggcaaaaa-aacacctatgtggcaattcccac 38161149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 19830445 - 19830559
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccatt 130  Q
    |||||||| |||||||  ||| |||| ||  |||||||||||| |||||||||||||||||||||| |||||| ||||| |||| |||||| ||||||||    
T  19830445 tgttttggcctactcacgaaactggtcttgcccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttttcgtcctaccccccatt 19830544  T
Q  131 ttatcctccaaaaac 145  Q
    |||| ||||||||||    
T  19830545 ttattctccaaaaac 19830559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 33 - 145
Target Start/End: Complemental strand, 29100371 - 29100257
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccatt 130  Q
    |||||||||||||||| |||| ||||  |  |||||||||||| |||||||||||| ||||||||| |||||| ||||| |||| |||||| ||||||||    
T  29100371 tgttttggtctactcacaaaattggtcctgcccttttaaaacagaacaaaacggtctttcaattatcatttttgttgcattttttgtcctaccccccatt 29100272  T
Q  131 ttatcctccaaaaac 145  Q
    |||| ||||||||||    
T  29100271 ttattctccaaaaac 29100257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 144
Target Start/End: Original strand, 28583464 - 28583577
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccatt 130  Q
    |||||||| |||||||| | | ||||| |  |||||||||||| || ||||| ||||||||||||| |||||||||||| |||| |||||| ||||||||    
T  28583464 tgttttggcctactcatgagattggttctgcccttttaaaacataataaaactgtccttcaattatcatttttattgcatttttcgtcctaccccccatt 28583563  T
Q  131 ttatcctccaaaaa 144  Q
    ||||||||||||||    
T  28583564 ttatcctccaaaaa 28583577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 33 - 124
Target Start/End: Complemental strand, 19830939 - 19830848
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgcattttagtcctacc 124  Q
    |||||||| ||||||| |||| ||||  | ||||||||||||| ||||||||||| |||||||||| |||||| ||||||||| ||||||||    
T  19830939 tgttttggcctactcacaaaactggtcctgtccttttaaaacataacaaaacggtacttcaattatcatttttgttgcatttttgtcctacc 19830848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 37786823 - 37786906
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||||||||||||||||| |||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  37786823 ccttttaaaacataacaaaacggtccttcaattatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaac 37786906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 63 - 179
Target Start/End: Complemental strand, 28584412 - 28584294
Alignment:
Q  63 tccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttta-gtcctaccccc-attttatcctccaaaaacacacatgtatcaaat 160  Q
    ||||||||||||| |||||||  ||||||||||||| |||||| ||| |||||  ||| ||||||| |||||||||||||||||| |  |||| ||| ||    
T  28584412 tccttttaaaacagaacaaaattgtccttcaattatcatttttgttgtatttttcgtcttaccccccattttatcctccaaaaacgccgatgtgtcagat 28584313  T
Q  161 ttttaactgatgtgacaaa 179  Q
    |||||||||||||| ||||    
T  28584312 ttttaactgatgtggcaaa 28584294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 19590581 - 19590664
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||||||||||||||||| |||||| ||||| ||||  ||||| |||||||||||| ||||||||||    
T  19590581 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttttcatcctaccccccattttattctccaaaaac 19590664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 67 - 144
Target Start/End: Complemental strand, 34534277 - 34534198
Alignment:
Q  67 tttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaa 144  Q
    ||||||||| |||||||||||||||||||||| |||||| ||||| |||| |||||| |||||||||||| |||||||||    
T  34534277 tttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaa 34534198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 145
Target Start/End: Original strand, 38858700 - 38858782
Alignment:
Q  65 cttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    ||||||||||| |||||||||||| ||||||||| |||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  38858700 cttttaaaacagaacaaaacggtcattcaattatcatttttgttgcatttttggtcctaccccccattttattctccaaaaac 38858782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 145
Target Start/End: Complemental strand, 2659359 - 2659246
Alignment:
Q  34 gttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattt 131  Q
    ||||||| ||| |||| ||| |||| ||  |||||||||||| |||||||||||| ||||||||| |||||| ||||| ||||  ||||| |||||||||    
T  2659359 gttttggcctattcatgaaactggtcttgcccttttaaaacagaacaaaacggtcattcaattatcatttttgttgcatttttcatcctaccccccattt 2659260  T
Q  132 tatcctccaaaaac 145  Q
    ||| ||||||||||    
T  2659259 tattctccaaaaac 2659246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 19591014 - 19590963
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  19591014 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttt 19590963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 23953218 - 23953135
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    ||||| |||||| |||||||||||||||||||||| |||||| ||||| |||| ||| || |||||||||||| ||||||||||    
T  23953218 cctttcaaaacagaacaaaacggtccttcaattatcatttttgttgcatttttcgtcataccccccattttattctccaaaaac 23953135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 29099906 - 29099957
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  29099906 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttt 29099957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 32005103 - 32005020
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctac-ccccattttatcctccaaaaac 145  Q
    |||||||||| | ||||||||||||||| |||||| |||||| ||||| |||| ||||||| ||||||||||| ||||||||||    
T  32005103 ccttttaaaatagaacaaaacggtcctttaattatcatttttgttgcatttttcgtcctactccccattttattctccaaaaac 32005020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 144
Target Start/End: Original strand, 4641497 - 4641578
Alignment:
Q  65 cttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaa 144  Q
    ||||| ||||| |||||||||||| ||||||||| |||||| ||||| |||| |||||| |||||||||||| |||||||||    
T  4641497 cttttgaaacataacaaaacggtcattcaattatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaa 4641578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 4641934 - 4641885
Alignment:
Q  63 tccttttaaaacaaaacaaaacggtccttcaattattatttttattgcat 112  Q
    ||||||||||||| |||||||||||||||||||||| |||||| ||||||    
T  4641934 tccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcat 4641885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 23952787 - 23952838
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||||||||||||| |||||  |||||||||    
T  23952787 ccttttaaaacagaacaaaacggtccttcaattatcattttggttgcatttt 23952838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 32004670 - 32004721
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| ||||||| |||||||||||||| |||||| |||||||||    
T  32004670 ccttttaaaacagaacaaaatggtccttcaattatcatttttgttgcatttt 32004721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 35288959 - 35289010
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| ||||||| |||||||||||||| |||||| |||||||||    
T  35288959 ccttttaaaacagaacaaaatggtccttcaattatcatttttgttgcatttt 35289010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 35289390 - 35289339
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||||||||||||| |||||  |||||||||    
T  35289390 ccttttaaaacagaacaaaacggtccttcaattatcattttggttgcatttt 35289339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 38859130 - 38859079
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||||||| ||||| |||||| |||||||||    
T  38859130 ccttttaaaacagaacaaaacggtccttccattatcatttttgttgcatttt 38859079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 2658895 - 2658946
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||| | ||||||| |||||||||||||| |||||| |||||||||    
T  2658895 ccttttaaaatagaacaaaatggtccttcaattatcatttttgttgcatttt 2658946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 37787255 - 37787205
Alignment:
Q  65 cttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||| || ||||||||||| |||||||||| |||||| |||||||||    
T  37787255 cttttaaatcagaacaaaacggttcttcaattatcatttttgttgcatttt 37787205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1585 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold1585
Description:

Target: scaffold1585; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 64 - 205
Target Start/End: Original strand, 623 - 766
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttta-gtcctacc-cccattttatcctccaaaaacacacatgtatcaaatt 161  Q
    |||||||||||| |||||||| ||||||||||||| |||||| ||| |||||  |||  ||| ||||||| ||||||||||||| ||||||||||| |||    
T  623 ccttttaaaacagaacaaaactgtccttcaattatcatttttgttgtatttttcgtctcacctcccatttgatcctccaaaaacgcacatgtatcagatt 722  T
Q  162 tttaactgatgtgacaaaaagaacacatatgtgacaattcccac 205  Q
    |||||||||||||||||||| ||||| |||||| ||||||||||    
T  723 tttaactgatgtgacaaaaaaaacacctatgtggcaattcccac 766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 33 - 144
Target Start/End: Complemental strand, 10392 - 10280
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctacccccattt 131  Q
    ||||||||||||||||  ||| |||| ||  |||||||||||| |||||||||||||||||||||| |||||| ||||| |||| |||||||||||||||    
T  10392 tgttttggtctactcacgaaactggtgtttcccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttttcgtcctacccccattt 10293  T
Q  132 tatcctccaaaaa 144  Q
    ||| |||||||||    
T  10292 tattctccaaaaa 10280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 64 - 194
Target Start/End: Complemental strand, 7777 - 7645
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttta-gtcctaccccc-attttatcctccaaaaacacacatgtatcaaatt 161  Q
    |||||||||||| |||||||| ||| |||| |||| |||||| |||||||||  ||||||||||| |||||||||||||||||| ||||||| ||| |||    
T  7777 ccttttaaaacagaacaaaactgtcgttcagttatcatttttgttgcatttttcgtcctaccccctattttatcctccaaaaacgcacatgtgtcagatt 7678  T
Q  162 tttaactgatgtgacaaaaagaacacatatgtg 194  Q
    ||||||||||||| |||| | ||||| ||||||    
T  7677 tttaactgatgtggcaaataaaacacctatgtg 7645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 49)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 65 - 208
Target Start/End: Complemental strand, 48713834 - 48713691
Alignment:
Q  65 cttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttta-gtcctaccc-ccattttatcctccaaaaacacacatgtatcaaattt 162  Q
    ||||||||||| |||||||  ||||||||||||| |||||| |||||||||  ||||| ||| |||||||||||||||||||| ||||||| ||| ||||    
T  48713834 cttttaaaacagaacaaaattgtccttcaattatcatttttgttgcatttttcgtcctcccctccattttatcctccaaaaacgcacatgtgtcagattt 48713735  T
Q  163 ttaactgatgtgacaaaaagaacacatatgtgacaattcccacatg 208  Q
    ||||||||||||  ||||| |||||   |||| |||||||||||||    
T  48713734 ttaactgatgtggtaaaaaaaacac--ctgtggcaattcccacatg 48713691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 33 - 145
Target Start/End: Complemental strand, 2118815 - 2118702
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctacccccattt 131  Q
    |||||||| || ||||| ||| ||||  ||||||||||||||| |||||||||||| ||||||||| |||||| ||||| |||| |||||||||||||||    
T  2118815 tgttttggcctgctcatgaaactggtcctatccttttaaaacataacaaaacggtcattcaattatcatttttgttgcatttttcgtcctacccccattt 2118716  T
Q  132 tatcctccaaaaac 145  Q
    ||| ||||||||||    
T  2118715 tattctccaaaaac 2118702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 35 - 151
Target Start/End: Complemental strand, 20958377 - 20958261
Alignment:
Q  35 ttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgcattttagtcctacccccattttat 134  Q
    |||||| |||||||  ||||||||  |  |||||||||||| ||||||   ||||||||||||| |||||| ||||||||| ||||||||||||||||||    
T  20958377 ttttggcctactcacgaaaatggtcctgcccttttaaaacagaacaaatatgtccttcaattatcatttttgttgcatttttgtcctacccccattttat 20958278  T
Q  135 cctccaaaaacacacat 151  Q
    ||||||||||| |||||    
T  20958277 cctccaaaaacgcacat 20958261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 33 - 148
Target Start/End: Original strand, 45082457 - 45082572
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctacccccattt 131  Q
    ||||||||||||||||  ||  |||||||  |||||||||| | |||||||||||||||||||||| |||||| ||||| |||| |||||||||||||||    
T  45082457 tgttttggtctactcacgaac-tggttttgcccttttaaaatagaacaaaacggtccttcaattatcatttttgttgcatttttcgtcctacccccattt 45082555  T
Q  132 tatcctccaaaaacaca 148  Q
    ||| |||||||||||||    
T  45082556 tattctccaaaaacaca 45082572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 48526252 - 48526333
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctacccccattttatcctccaaaaa 144  Q
    |||||||||||| |||||||||||||||||||||| |||||| ||||| |||| |||||||||||||||||| |||||||||    
T  48526252 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttttcgtcctacccccattttattctccaaaaa 48526333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 46193894 - 46193811
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||| |||| |||||| |||||||||||| ||||||||||    
T  46193894 ccttttaaaacagaacaaaacggtccttcaattatcatttttattgcatttttcgtcctaccccccattttattctccaaaaac 46193811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 145
Target Start/End: Complemental strand, 43243800 - 43243687
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctacccccattt 131  Q
    |||||||| |||||||  ||||||||  |  |||||||||||| |||||||  || |||||||||| |||||| ||||| |||| |||||||||||||||    
T  43243800 tgttttggcctactcacgaaaatggtcatgcccttttaaaacagaacaaaattgttcttcaattatcatttttgttgcattttttgtcctacccccattt 43243701  T
Q  132 tatcctccaaaaac 145  Q
    ||||||||||||||    
T  43243700 tatcctccaaaaac 43243687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 33 - 199
Target Start/End: Complemental strand, 44892668 - 44892500
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttta-gtcctaccc-ccatt 130  Q
    |||||||  |||||||  ||||||||| |  | |||||||||| |||||||| ||| |||||||||  ||||| |||||||||  ||||||||| |||||    
T  44892668 tgttttgacctactcacgaaaatggttctgccattttaaaacagaacaaaactgtctttcaattatattttttgttgcatttttcgtcctaccctccatt 44892569  T
Q  131 ttatcctccaaaaacacacatgtatcaaatttttaactgatgtgacaaaaagaacacatatgtgacaat 199  Q
    ||||||||||||||| |  || |  || | |||||||||||||| |||| | |||||||||||||||||    
T  44892568 ttatcctccaaaaacgctgatatggcagaattttaactgatgtggcaaataaaacacatatgtgacaat 44892500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 65 - 145
Target Start/End: Original strand, 33109741 - 33109823
Alignment:
Q  65 cttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    ||||||||||| |||||||||||||||||||||| |||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  33109741 cttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaac 33109823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 66 - 145
Target Start/End: Complemental strand, 22170424 - 22170343
Alignment:
Q  66 ttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    ||||||||||||||||||||||| ||||||||| |||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  22170424 ttttaaaacaaaacaaaacggtcattcaattatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaac 22170343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 64 - 142
Target Start/End: Original strand, 23494499 - 23494579
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaa 142  Q
    |||||||||||| |||||| ||||||||||||||| |||||||||||| |||| |||||| |||||||||||| |||||||    
T  23494499 ccttttaaaacagaacaaagcggtccttcaattatcatttttattgcatttttcgtcctaccccccattttattctccaaa 23494579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 12234385 - 12234468
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||||||| ||||||||| |||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  12234385 ccttttaaaacagaacaaaacggtcattcaattatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaac 12234468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 15523291 - 15523342
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  15523291 ccttttaaaacagaacaaaacggtccttcaattattattttttttgcatttt 15523342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 15523723 - 15523640
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||||||||||| |||||||||| ||| |||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  15523723 ccttttaaaacaaaacaaaatggtccttcaagtatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaac 15523640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 71 - 145
Target Start/End: Complemental strand, 22434659 - 22434584
Alignment:
Q  71 aaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctacccccattttatcctccaaaaac 145  Q
    ||||| |||||||||||| ||||||||| |||||| ||||| |||| |||||||||||||||||| ||||||||||    
T  22434659 aaacagaacaaaacggtcattcaattatcatttttgttgcatttttcgtcctacccccattttattctccaaaaac 22434584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 25447725 - 25447642
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctaccc-ccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||||||| ||||||||| |||||| ||||| |||| ||||||||| ||||||||| ||||||||||    
T  25447725 ccttttaaaacagaacaaaacggtctttcaattatcatttttgttgcatttttcgtcctaccctccattttattctccaaaaac 25447642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 25937726 - 25937809
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcct-acccccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||||||||||||||||| |||||| ||||| |||| |||||  |||||||||||| ||||||||||    
T  25937726 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcattttttgtcctgtcccccattttattctccaaaaac 25937809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 38962308 - 38962225
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||||||||||||||||| |||||| ||||| |||| |||||| |||||||||||| || |||||||    
T  38962308 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttttcgtcctaccccccattttattcttcaaaaac 38962225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 115
Target Start/End: Original strand, 18751624 - 18751706
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||| |||||||||||| ||||  |  |||||||||||| |||||||||||||||||| ||| |||||| |||||||||    
T  18751624 tgttttggcctactcataaaactggtcatgcccttttaaaacagaacaaaacggtccttcaaatatcatttttgttgcatttt 18751706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 115
Target Start/End: Original strand, 25447272 - 25447354
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||| |||||||| ||| ||||  |  |||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  25447272 tgttttggcctactcatgaaactggtcctgcccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttt 25447354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 48526701 - 48526619
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    ||||||||||||||||  ||| |||| ||  |||||||||||| |||||||||||||||||||||| | |||| |||||||||    
T  48526701 tgttttggtctactcacgaaactggtcttgcccttttaaaacagaacaaaacggtccttcaattatcacttttgttgcatttt 48526619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 145
Target Start/End: Original strand, 4219615 - 4219696
Alignment:
Q  66 ttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||| |||||||||| ||||||||||||| |||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  4219615 ttttaaaataaaacaaaacagtccttcaattatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaac 4219696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 145
Target Start/End: Complemental strand, 11153634 - 11153553
Alignment:
Q  66 ttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctaccc-ccattttatcctccaaaaac 145  Q
    |||||||||| ||||||||| |||||||||||| |||||| ||||| |||| ||||||||| ||||||||| ||||||||||    
T  11153634 ttttaaaacagaacaaaacgttccttcaattatcatttttgttgcatttttcgtcctaccctccattttattctccaaaaac 11153553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 64 - 142
Target Start/End: Original strand, 48708351 - 48708431
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcattt-tagtcctacc-cccattttatcctccaaa 142  Q
    |||||||||||| |||||||| ||||||||||||| |||||| |||||||| || ||||||| | ||||||||||||||||    
T  48708351 ccttttaaaacacaacaaaactgtccttcaattatcatttttgttgcatttataatcctaccactcattttatcctccaaa 48708431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 12234818 - 12234767
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  12234818 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttt 12234767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 23494932 - 23494881
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  23494932 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttt 23494881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 33109953 - 33109902
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  33109953 ccttttaaaacataacaaaacggtccttcaattatcatttttgttgcatttt 33109902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 45082913 - 45082862
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  45082913 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttt 45082862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 51020853 - 51020936
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| ||||||||| |||||||||||| |||||| ||||| |||| |||||| |||||||||||| || |||||||    
T  51020853 ccttttaaaacagaacaaaacgatccttcaattatcatttttgttgcatttttcgtcctaccccccattttattcttcaaaaac 51020936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 54995125 - 54995176
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  54995125 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttt 54995176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 142
Target Start/End: Original strand, 16690954 - 16691072
Alignment:
Q  26 gtccttttgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctacc 124  Q
    |||||| ||||||| ||||||||  ||||||||  |  |  |||||||||||||||||   |||||||||||| |||||| ||||| |||| ||||||||    
T  16690954 gtccttgtgttttgatctactcacgaaaatggtcctgcctctttaaaacaaaacaaaattatccttcaattatcatttttgttgcatttttcgtcctacc 16691053  T
Q  125 ccc-attttatcctccaaa 142  Q
    ||| |||||||||||||||    
T  16691054 cccgattttatcctccaaa 16691072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 25938198 - 25938109
Alignment:
Q  26 gtccttttgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||| |||||||| |||||||  ||| ||||  |  |||||||||||| |||||||| ||||||||||||| |||||| |||||||||    
T  25938198 gtccttgtgttttggcctactcacgaaattggtcctgcccttttaaaacagaacaaaacagtccttcaattatcatttttgttgcatttt 25938109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 145
Target Start/End: Original strand, 43242328 - 43242409
Alignment:
Q  66 ttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctacc-cccattttatcctccaaaaac 145  Q
    |||||||||| |||||||||||| ||||||||| |||||| ||||| |||| |||||||| || |||||||| |||||||||    
T  43242328 ttttaaaacagaacaaaacggtcattcaattatcattttttttgcatttttcgtcctacctccaattttatcatccaaaaac 43242409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 20471000 - 20470949
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||| ||||||||| |||||| |||||||||    
T  20471000 ccttttaaaacagaacaaaacggtcattcaattatcatttttgttgcatttt 20470949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 22434235 - 22434286
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||||||||||||| |||||| ||| |||||    
T  22434235 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgtatttt 22434286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 46193461 - 46193512
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| ||||||| |||||||||||||| |||||| |||||||||    
T  46193461 ccttttaaaacagaacaaaaaggtccttcaattatcatttttgttgcatttt 46193512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 115
Target Start/End: Original strand, 11153171 - 11153253
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||| ||||||| |||| ||||  |  |||||||||| | || ||||||||||||||||||| |||||| |||||||||    
T  11153171 tgttttggcctactcacaaaattggtcatgcccttttaaaatagaataaaacggtccttcaattatcatttttgttgcatttt 11153253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 115
Target Start/End: Original strand, 2118311 - 2118400
Alignment:
Q  26 gtccttttgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||| |||||||| |||||||  ||| ||||  |  |||||||||||| |||||||  ||||||||||||| |||||| |||||||||    
T  2118311 gtccttgtgttttggcctactcacgaaattggtcctgcccttttaaaacataacaaaatagtccttcaattatcatttttgttgcatttt 2118400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 4220047 - 4219997
Alignment:
Q  65 cttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    ||||||||||| ||||||| |||| ||||||||| |||||| |||||||||    
T  4220047 cttttaaaacagaacaaaatggtcattcaattatcatttttgttgcatttt 4219997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 145
Target Start/End: Complemental strand, 12503912 - 12503842
Alignment:
Q  77 aacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||||||||| ||| |||||| ||||| |||| ||| || |||||||||||| ||||||||||    
T  12503912 aacaaaacggtccttcaagtatcatttttgttgcatttttcgtcataccccccattttattctccaaaaac 12503842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 18764040 - 18763958
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||| |||||||  ||| ||||  | ||||||||||||| ||||||| |||| ||||| ||| |||||| |||||||||    
T  18764040 tgttttggcctactcacgaaactggtcatgtccttttaaaacagaacaaaatggtcattcaagtatcatttttgttgcatttt 18763958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 145
Target Start/End: Complemental strand, 48295029 - 48294948
Alignment:
Q  67 tttaaaacaaaacaaaacggtccttcaattattatttttattgcatttta--gtcctaccccc-attttatcctccaaaaac 145  Q
    ||||||||| |||||||  ||| ||||||||| |||||| |||||||||   ||||||||||| |||||||| |||||||||    
T  48295029 tttaaaacacaacaaaattgtcattcaattatcatttttgttgcatttttccgtcctaccccccattttatcttccaaaaac 48294948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 309
Target Start/End: Complemental strand, 48713588 - 48713558
Alignment:
Q  279 cagaattattaacattcattcatctcttctt 309  Q
    |||||||||||||||||||||||||||||||    
T  48713588 cagaattattaacattcattcatctcttctt 48713558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 12503494 - 12503543
Alignment:
Q  66 ttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||| |||||||  ||||||||||||| |||||| |||||||||    
T  12503494 ttttaaaacagaacaaaattgtccttcaattatcatttttgttgcatttt 12503543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 142
Target Start/End: Complemental strand, 16691554 - 16691481
Alignment:
Q  71 aaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctacc-cccattttatcctccaaa 142  Q
    ||||| |||||||  |||||| ||||||||||||| ||||| |||| ||| |||| ||||||||||||||||||    
T  16691554 aaacataacaaaattgtcctttaattattatttttgttgcatttttcgtcatacctcccattttatcctccaaa 16691481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 35363083 - 35363038
Alignment:
Q  70 aaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||| |||||||||||||| ||||||||| |||||| |||||||||    
T  35363083 aaaaaaaaacaaaacggtcattcaattatcatttttgttgcatttt 35363038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 144
Target Start/End: Complemental strand, 43281310 - 43281198
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttta-gtcctaccccc-att 130  Q
    |||||||| |||||||  ||||||||  |  | |||||||||| |||||||  || |||||||||| |||||| |||||||||  ||||||||||| |||    
T  43281310 tgttttggcctactcacgaaaatggtcatgccattttaaaacagaacaaaaatgttcttcaattat-atttttgttgcatttttcgtcctaccccccatt 43281212  T
Q  131 ttatcctccaaaaa 144  Q
    |||||||| |||||    
T  43281211 ttatcctcaaaaaa 43281198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 48293653 - 48293701
Alignment:
Q  67 tttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||||||||  || |||||||||| |||||| |||||||||    
T  48293653 tttaaaacaaaacaaaattgttcttcaattatcatttttgttgcatttt 48293701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 51021284 - 51021244
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttt 104  Q
    |||||||||||| ||||||||||||||| |||||| |||||    
T  51021284 ccttttaaaacacaacaaaacggtcctttaattatcatttt 51021244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 15708996 - 15709109
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgcat-tttagtcctacccccattt 131  Q
    |||||||| |||||||  ||| ||||| |  |||||||||||| |||||||||||||||||||||| |||||| |||||| ||| |||||||||||||||    
T  15708996 tgttttggcctactcacgaaactggttatgcccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatatttcgtcctacccccattt 15709095  T
Q  132 tatcctccaaaaac 145  Q
    ||| ||||||||||    
T  15709096 tattctccaaaaac 15709109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 65 - 194
Target Start/End: Complemental strand, 7349505 - 7349374
Alignment:
Q  65 cttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctaccccc-attttatcctccaaaaacacacatgtatcaaattt 162  Q
    ||||||||||||||||||||  ||||||| |||| |||||| ||||| ||||  |||||||||| ||||| |||||||||||| ||||||| ||| ||||    
T  7349505 cttttaaaacaaaacaaaactatccttcagttatcatttttgttgcacttttcatcctaccccccattttttcctccaaaaacgcacatgtgtcagattt 7349406  T
Q  163 ttaactgatgtgacaaaaagaacacatatgtg 194  Q
    |||||||||||| |||| | ||||| ||||||    
T  7349405 ttaactgatgtggcaaataaaacacctatgtg 7349374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 90 - 194
Target Start/End: Complemental strand, 13814190 - 13814087
Alignment:
Q  90 ttcaattattatttttattgca-ttttagtcctacccccattttatcctccaaaaacacacatgtatcaaatttttaactgatgtgacaaaaagaacaca 188  Q
    ||||||||| |||||| ||||| |||| ||||||||||||||||||||||||||||| ||||||  ||| |||||||||||||||| |||| | |||||     
T  13814190 ttcaattatcatttttgttgcacttttcgtcctacccccattttatcctccaaaaacgcacatg--tcatatttttaactgatgtggcaaataaaacacc 13814093  T
Q  189 tatgtg 194  Q
    ||||||    
T  13814092 tatgtg 13814087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 145
Target Start/End: Complemental strand, 14464040 - 14463927
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctacccccattt 131  Q
    |||||||| |||||||  ||| |  |||| ||||||||||| | ||||||||| |||||||||||| |||||||||||| |||| |||||||||| ||||    
T  14464040 tgttttggcctactcacgaaactaattttgtccttttaaaatagaacaaaacgatccttcaattatcatttttattgcatttttcgtcctaccccaattt 14463941  T
Q  132 tatcctccaaaaac 145  Q
    ||| ||||||||||    
T  14463940 tattctccaaaaac 14463927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 16018645 - 16018725
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt-agtcctacccccattttatcctccaaaaa 144  Q
    |||||||||| | ||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||| |||||||||    
T  16018645 ccttttaaaatagaacaaaacggtccttcaatta-tatttttattgcattttccgtcctacccccattttattctccaaaaa 16018725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 18183458 - 18183375
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctacccc-cattttatcctccaaaaac 145  Q
    |||||||||||| |||||||||||||||||||||| |||||| ||||| |||| |||||||||| |||||||| ||||||||||    
T  18183458 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttttcgtcctacccctcattttattctccaaaaac 18183375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 64 - 144
Target Start/End: Complemental strand, 164680 - 164598
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaa 144  Q
    |||||||||||| |||||||||||||||||||||| |||||| ||||| |||| |||||| |||||||||||| |||||||||    
T  164680 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcattttttgtcctaccccccattttattctccaaaaa 164598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 33 - 145
Target Start/End: Complemental strand, 29455262 - 29455148
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccatt 130  Q
    ||||||||||||||||  ||| ||||  |  |||||||||||| ||||||| |||||||||||||| |||||| ||||| |||| |||||| ||||||||    
T  29455262 tgttttggtctactcacgaaactggtcctgcccttttaaaacagaacaaaatggtccttcaattatcatttttgttgcatttttcgtcctaccccccatt 29455163  T
Q  131 ttatcctccaaaaac 145  Q
    |||| ||||||||||    
T  29455162 ttattctccaaaaac 29455148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 19359154 - 19359275
Alignment:
Q  26 gtccttttgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-c 123  Q
    ||||| ||||||||| |||||||  ||| ||||  |  |||||||||| | |||||||||||||||||||||| |||||| ||||| |||| |||||| |    
T  19359154 gtcctcttgttttggcctactcacgaaactggtcctgcccttttaaaatagaacaaaacggtccttcaattatcatttttgttgcatttttcgtcctacc 19359253  T
Q  124 ccccattttatcctccaaaaac 145  Q
    ||||||||||| ||||||||||    
T  19359254 ccccattttattctccaaaaac 19359275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 2865244 - 2865161
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||||||||||||||||| |||||| || || |||| |||||| |||||||||||| ||||||||||    
T  2865244 ccttttaaaacagaacaaaacggtccttcaattatcatttttgtttcatttttcgtcctaccccccattttattctccaaaaac 2865161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 5819418 - 5819335
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||||||| ||||||||| |||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  5819418 ccttttaaaacagaacaaaacggtcattcaattatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaac 5819335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 145
Target Start/End: Original strand, 8647496 - 8647577
Alignment:
Q  66 ttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||| ||||||| |||||||||||||| |||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  8647496 ttttaaaacagaacaaaatggtccttcaattatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaac 8647577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 66 - 173
Target Start/End: Original strand, 4219721 - 4219829
Alignment:
Q  66 ttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttta-gtcctacccccattttatcctccaaaaacacacatgtatcaaattttt 164  Q
    |||||||||| ||||||   |||||| | |||| |||||| |||||||||  ||||||||||||||||||||||||||||  || ||||  || ||||||    
T  4219721 ttttaaaacagaacaaagttgtcctttagttatcatttttgttgcatttttcgtcctacccccattttatcctccaaaaatgcatatgtggcagattttt 4219820  T
Q  165 aactgatgt 173  Q
    |||||||||    
T  4219821 aactgatgt 4219829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 2864810 - 2864861
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  2864810 ccttttaaaacataacaaaacggtccttcaattatcatttttgttgcatttt 2864861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 4623207 - 4623285
Alignment:
Q  67 tttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt-agtcctacccccattttatcctccaaaaac 145  Q
    ||||||||| |||||||  ||||||||||||| |||||||| |||||||  |||||| ||||||||||||||||||||||    
T  4623207 tttaaaacagaacaaaattgtccttcaattatcatttttatggcattttccgtccta-ccccattttatcctccaaaaac 4623285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 8647927 - 8647876
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  8647927 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttt 8647876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 14215732 - 14215649
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcct-acccccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||||||||||||| ||| |||||| ||||| |||| ||| | ||||||||||||| ||||||||||    
T  14215732 ccttttaaaacagaacaaaacggtccttcaagtatcatttttgttgcatttttcgtcttaacccccattttattctccaaaaac 14215649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 18183026 - 18183077
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  18183026 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttt 18183077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 24362325 - 24362242
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| || ||||||||||||||| ||| |||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  24362325 ccttttaaaacagaataaaacggtccttcaagtatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaac 24362242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 8460986 - 8461068
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaa 144  Q
    |||||||||||| |||||||||||| ||||||||| |||||| ||||| |||| ||| || |||||||||||| |||||||||    
T  8460986 ccttttaaaacagaacaaaacggtcattcaattatcatttttgttgcatttttcgtcataccccccattttattctccaaaaa 8461068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 174
Target Start/End: Complemental strand, 6019259 - 6019147
Alignment:
Q  65 cttttaaaacaaaacaaaacggtccttcaattattatttttattgca--ttttagtcctacc-cccattttatcctccaaaaacacacatgtatcaaatt 161  Q
    ||||||||||| |||||||| ||| || |||||| |||||| |||||  |||| |||||||| ||||||||||||||||||||  |  ||||  |||| |    
T  6019259 cttttaaaacagaacaaaactgtcttttaattatcatttttgttgcattttttcgtcctacctcccattttatcctccaaaaatgctgatgtgacaaaat 6019160  T
Q  162 tttaactgatgtg 174  Q
    |||||||||||||    
T  6019159 tttaactgatgtg 6019147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 5818985 - 5819036
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||| ||||||||| |||||| |||||||||    
T  5818985 ccttttaaaacagaacaaaacggtctttcaattatcatttttgttgcatttt 5819036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 15371926 - 15371977
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| ||||||| |||||||||||||| |||||| |||||||||    
T  15371926 ccttttaaaacagaacaaaatggtccttcaattatcatttttgttgcatttt 15371977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 15372362 - 15372311
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||||||||| ||| |||||| |||||||||    
T  15372362 ccttttaaaacagaacaaaacggtccttcaagtatcatttttgttgcatttt 15372311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 19359625 - 19359574
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||||||||||||| |||||| ||| |||||    
T  19359625 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttggatttt 19359574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 145
Target Start/End: Original strand, 25000150 - 25000229
Alignment:
Q  68 ttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||| || |||| ||||||| |||||| |||||||||||| |||| |||||| |||||||||||| ||||||||||    
T  25000150 ttaaaacagaataaaatggtcctttaattatcatttttattgcattttttgtcctaccccccattttattctccaaaaac 25000229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 4222211 - 4222129
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctacccccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||  ||| |||| |||| |||||||||||| |||| ||||||||||||||||  ||| |||||||    
T  4222211 ccttttaaaacagaacaaaattgtcattcagttatcatttttattgcatttttcgtcctacccccattttgcccttcaaaaac 4222129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 199
Target Start/End: Complemental strand, 4624711 - 4624577
Alignment:
Q  67 tttaaaacaaaacaaaacggtccttcaattattatttttattgcatttta-gtcctaccccc-attttatcctccaaaaacacacatgtatcaaattttt 164  Q
    ||||||||| ||||||||  || ||||||||| |||| | |||||||||  ||||||||||| |||||||||| |||||||||  |||| ||| | ||||    
T  4624711 tttaaaacataacaaaactatcattcaattatcatttatgttgcatttttcgtcctaccccccattttatccttcaaaaacactgatgtgtcagaatttt 4624612  T
Q  165 aactgatgtgacaaaaagaacacatatgtgacaat 199  Q
    || ||||||  | || ||||||| |||||| ||||    
T  4624611 aagtgatgttgccaatagaacacttatgtggcaat 4624577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 8461419 - 8461369
Alignment:
Q  65 cttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    ||||||||||| |||||||||||||||||||||| ||||||  ||||||||    
T  8461419 cttttaaaacagaacaaaacggtccttcaattatcatttttgctgcatttt 8461369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 115
Target Start/End: Original strand, 14215266 - 14215348
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    ||||||||  ||||||  ||| ||||| || |||||||||||| ||||||| ||||||||| |||| |||||| |||||||||    
T  14215266 tgttttggcttactcacgaaactggttatacccttttaaaacagaacaaaaaggtccttcagttatcatttttgttgcatttt 14215348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 150
Target Start/End: Original strand, 6018339 - 6018457
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctaccc-ccatt 130  Q
    ||||||| ||||||||  ||| ||||  | ||||||||||||| |||||||   | |||||||||| |||||| ||||| |||||||||||||| | |||    
T  6018339 tgttttgttctactcacgaaactggtcatgtccttttaaaacagaacaaaattat-cttcaattatcatttttgttgcagttttagtcctaccctctatt 6018437  T
Q  131 ttatcctccaaaaacacaca 150  Q
    ||  ||||||||||||||||    
T  6018438 ttcacctccaaaaacacaca 6018457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 29454796 - 29454847
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| ||||||||||||||| |||||| ||||||  ||||||||    
T  29454796 ccttttaaaacagaacaaaacggtccttgaattatcatttttgctgcatttt 29454847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 98
Target Start/End: Original strand, 24331615 - 24331649
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattat 98  Q
    |||||||||||| ||||||||||||||||||||||    
T  24331615 ccttttaaaacagaacaaaacggtccttcaattat 24331649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 25000577 - 25000527
Alignment:
Q  65 cttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    ||||||||||| ||||||| |||| ||||||||| |||||| |||||||||    
T  25000577 cttttaaaacagaacaaaatggtcattcaattatcatttttgttgcatttt 25000527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 164247 - 164287
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttt 104  Q
    ||||||| ||||||||||||||||| ||||||||| |||||    
T  164247 ccttttataacaaaacaaaacggtcattcaattatcatttt 164287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 145
Target Start/End: Complemental strand, 24332049 - 24331966
Alignment:
Q  66 ttttaaaacaaaacaaaacggtccttcaattatta-tttttattgca--ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||| |||||||||||||| ||||||| | ||||| |||||  |||| |||||| |||||||| ||| ||||||||||    
T  24332049 ttttaaaacagaacaaaacggtcctgcaattatcattttttgttgcattttttcgtcctaccccccattctattctccaaaaac 24331966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 7446367 - 7446480
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctacccccattt 131  Q
    ||||||||||||||||| ||| ||||  |  |||||||||||| |||||||||||| ||||||||| |||||||||||| |||| ||| |||||||||||    
T  7446367 tgttttggtctactcatgaaattggtcctgcccttttaaaacagaacaaaacggtcattcaattatcatttttattgcatttttcgtcatacccccattt 7446466  T
Q  132 tatcctccaaaaac 145  Q
    ||| ||||||||||    
T  7446467 tattctccaaaaac 7446480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 33 - 179
Target Start/End: Original strand, 15551524 - 15551672
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttta-gtcctaccc-ccatt 130  Q
    ||||||||| ||||||  ||||||||  |  | ||||||||||||||||||  |||||||| |||| |||||| |||||||||  |||| |||| |||||    
T  15551524 tgttttggtttactcacgaaaatggtcatgcctttttaaaacaaaacaaaaatgtccttcagttatcatttttgttgcatttttcgtccaaccctccatt 15551623  T
Q  131 ttatcctccaaaaacacacatgtatcaaatttttaactgatgtgacaaa 179  Q
    ||||||||||||||| |||||||  || |||||||||||||||| ||||    
T  15551624 ttatcctccaaaaacgcacatgtggcagatttttaactgatgtggcaaa 15551672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 239408 - 239491
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||||||||||||||||| |||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  239408 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaac 239491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 11090577 - 11090660
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||||||||||||||||| |||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  11090577 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaac 11090660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 20444805 - 20444888
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| ||||||||||||||||| |||| |||||| ||||| |||| |||||| |||||||||||||||||||||||    
T  20444805 ccttttaaaacagaacaaaacggtccttcagttatcatttttgttgcagttttcgtcctaccccccattttatcctccaaaaac 20444888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 22374376 - 22374459
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||||||||||||||||| |||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  22374376 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaac 22374459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 40027196 - 40027279
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctaccc-ccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||||||||||||||||| |||||| ||||| |||| ||||||||| ||||||||| ||||||||||    
T  40027196 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcattttttgtcctaccctccattttattctccaaaaac 40027279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 14432167 - 14432281
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccatt 130  Q
    |||||||| |||||||| ||| |||| ||  |||||||||| | |||||||||||||||||| ||| |||||| ||||| |||| |||||| ||||||||    
T  14432167 tgttttggcctactcatgaaactggtcttgcccttttaaaatataacaaaacggtccttcaactatcatttttgttgcatttttggtcctaccccccatt 14432266  T
Q  131 ttatcctccaaaaac 145  Q
    |||| ||||||||||    
T  14432267 ttattctccaaaaac 14432281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 26538153 - 26538239
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaacaca 148  Q
    |||||||||||| |||||| ||||||||||||||| |||||| ||||| |||| |||||| |||||||||||| |||||||||||||    
T  26538153 ccttttaaaacagaacaaagcggtccttcaattatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaacaca 26538239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 33 - 145
Target Start/End: Complemental strand, 35781183 - 35781069
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcct-acccccatt 130  Q
    |||||||| |||||||  ||||||||  |  |||||||||||| ||||||||  |||||||||||| |||||| ||||| |||| ||||| |||||||||    
T  35781183 tgttttggcctactcacgaaaatggtcatgcccttttaaaacagaacaaaactatccttcaattatcatttttgttgcatttttcgtcctaacccccatt 35781084  T
Q  131 ttatcctccaaaaac 145  Q
    |||||||||||||||    
T  35781083 ttatcctccaaaaac 35781069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 1978126 - 1978247
Alignment:
Q  26 gtccttttgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcct-ac 123  Q
    |||||| |||||||| |||||||  ||| ||||  |  |||||||||||| |||||||||||||||||||||| |||||| ||||| |||| |||||  |    
T  1978126 gtccttgtgttttggcctactcacgaaactggtcctgcccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcattttttgtcctgtc 1978225  T
Q  124 ccccattttatcctccaaaaac 145  Q
    ||||||||||| ||||||||||    
T  1978226 ccccattttattctccaaaaac 1978247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 65 - 145
Target Start/End: Original strand, 3025523 - 3025604
Alignment:
Q  65 cttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctacccccattttatcctccaaaaac 145  Q
    ||||||||||| |||||||||||||||||| ||| |||||| ||||| |||| |||||||||||||||||| ||| ||||||    
T  3025523 cttttaaaacagaacaaaacggtccttcaagtatcatttttgttgcatttttcgtcctacccccattttattctcaaaaaac 3025604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 33 - 144
Target Start/End: Original strand, 28616638 - 28616751
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgc-attttagtccta-cccccatt 130  Q
    |||||||| |||||||  ||| |||| ||  |||||||||||| |||||||||||||||||||||| |||||| |||| ||||| |||||| ||||||||    
T  28616638 tgttttggcctactcacgaaactggtcttgcccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcaattttcgtcctaccccccatt 28616737  T
Q  131 ttatcctccaaaaa 144  Q
    ||||  ||||||||    
T  28616738 ttattatccaaaaa 28616751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 40815834 - 40815751
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||||| ||||||||||| |||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  40815834 ccttttaaaacagaacaaaacggcccttcaattatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaac 40815751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 22374845 - 22374763
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||| |||||||  ||| |||| ||  |||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  22374845 tgttttggcctactcacgaaattggtcttgcccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttt 22374763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 28617134 - 28617052
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||| |||||||  ||| ||||| | ||||||||||||| ||||||| |||||||||||||| |||||| |||||||||    
T  28617134 tgttttggcctactcacgaaactggttctgtccttttaaaacagaacaaaatggtccttcaattatcatttttgttgcatttt 28617052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 28847183 - 28847133
Alignment:
Q  65 cttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  28847183 cttttaaaacaaaacaaaacggtccttcaattatcatttttgttgcatttt 28847133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 18450886 - 18450947
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctacc 124  Q
    |||||||||||| |||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  18450886 ccttttaaaacagaacaaaacggtccttcaattatcattttttttgcatttttagtcctacc 18450947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 145
Target Start/End: Original strand, 35779766 - 35779847
Alignment:
Q  66 ttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||| |||||||  ||||||||||||| |||||| ||||| |||| |||||| |||||||||||||||||||||||    
T  35779766 ttttaaaacagaacaaaattgtccttcaattatcatttttgttgcattttttgtcctaccccccattttatcctccaaaaac 35779847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 145
Target Start/End: Original strand, 43058391 - 43058472
Alignment:
Q  66 ttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||| |||||||||||||||||||||| |||||| ||||| |||| || ||| |||||||||||| ||||||||||    
T  43058391 ttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttttcgttctaccccccattttattctccaaaaac 43058472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 3025951 - 3025901
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  3025951 ccttttaaaacaaa-caaaacggtccttcaattattatttttgttgcatttt 3025901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 7446835 - 7446784
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  7446835 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttt 7446784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 145
Target Start/End: Complemental strand, 8425880 - 8425766
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctaccccc-att 130  Q
    ||||||||||||||||  ||| ||||  |  |||||||||| | |||||||| ||||||||||||| |||||| ||||| |||| ||| ||||||| |||    
T  8425880 tgttttggtctactcacgaaattggtcctgcccttttaaaatagaacaaaactgtccttcaattatcatttttgttgcatttttcgtcttacccccaatt 8425781  T
Q  131 ttatcctccaaaaac 145  Q
    |||| ||||||||||    
T  8425780 ttattctccaaaaac 8425766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 20440520 - 20440438
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctacccccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||||||| |||| |||| |||||| ||||| |||| |||||| ||||  ||||||||||||||||    
T  20440520 ccttttaaaacagaacaaaacggtcattcagttatcatttttgttgcagttttcgtcctatcccccatttatcctccaaaaac 20440438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 115
Target Start/End: Original strand, 40815370 - 40815452
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||| |||||||  ||| |||| ||  |||||||||||| ||||||||||| |||||||||| |||||| |||||||||    
T  40815370 tgttttggcctactcacgaaactggtcttgcccttttaaaacataacaaaacggttcttcaattatcatttttgttgcatttt 40815452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 1978636 - 1978547
Alignment:
Q  26 gtccttttgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||| |||||||| |||||||  ||| ||||  |  |||||||||||| |||||||| ||||||||||||| |||||| |||||||||    
T  1978636 gtccttgtgttttggcctactcacgaaattggtcctgcccttttaaaacagaacaaaacagtccttcaattatcatttttgttgcatttt 1978547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 68 - 127
Target Start/End: Complemental strand, 26538564 - 26538504
Alignment:
Q  68 ttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctaccccc 127  Q
    |||||||| |||||||||||||||||||||| |||||| ||||| |||| |||||||||||    
T  26538564 ttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttttcgtcctaccccc 26538504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 40027629 - 40027578
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||| ||||||||| |||||| |||||||||    
T  40027629 ccttttaaaacagaacaaaacggtctttcaattatcatttttgttgcatttt 40027578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 199
Target Start/End: Complemental strand, 2190516 - 2190428
Alignment:
Q  112 ttttagtcctaccccc--attttatcctccaaaaacacacatgtatcaaatttttaactgatgtgacaaaaagaacacatatgtgacaat 199  Q
    ||||||||||||||||  |||| ||| ||||||||| |  |||| ||||| |||||||||||||| | |||||||||| |||||||||||    
T  2190516 ttttagtcctacccccgaatttcatc-tccaaaaacgctgatgtgtcaaaattttaactgatgtggccaaaagaacacctatgtgacaat 2190428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 115
Target Start/End: Original strand, 8425373 - 8425461
Alignment:
Q  26 gtccttttgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||| |||||||| |||||||  ||| |||| ||| | |||||||||| ||||||||||| |||||||||| |||| | |||||||||    
T  8425373 gtccttgtgttttggcctactcacgaaattggtcttacctttttaaaacagaacaaaacggt-cttcaattatcatttgtgttgcatttt 8425461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 9747636 - 9747700
Alignment:
Q  135 cctccaaaaacacacatgtatcaaatttttaactgatgtgacaaaaagaacacatatgtgacaat 199  Q
    |||||||| ||||  |||| ||||| |||||||||||||| | |||||||||| |||||||||||    
T  9747636 cctccaaacacactgatgtgtcaaaattttaactgatgtggccaaaagaacacctatgtgacaat 9747700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 239841 - 239790
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| ||||||| |||||||||||||| |||||| |||| ||||    
T  239841 ccttttaaaacagaacaaaatggtccttcaattatcatttttgttgcgtttt 239790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 8972293 - 8972376
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttta-gtcctaccccc-attttatcctccaaaaac 145  Q
    ||||| |||||| |||||||  ||| ||||||||| |||||| |||||||||  || |||||||| ||||||||||||||||||    
T  8972293 cctttcaaaacagaacaaaattgtcattcaattatcatttttgttgcatttttcgttctaccccctattttatcctccaaaaac 8972376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 11091009 - 11090958
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||||||||||||| ||| || ||| |||||    
T  11091009 ccttttaaaacagaacaaaacggtccttcaattatcattattgttgtatttt 11090958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 18451320 - 18451237
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||  ||||||||| ||| |||||| ||||| ||||  ||||| |||||||||||| ||||||||||    
T  18451320 ccttttaaaacagaacaaaatagtccttcaaatatcatttttgttgcatttttcttcctaccccccattttattctccaaaaac 18451237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 14432661 - 14432579
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||| |||||||| ||| ||||  |  | |||||||||| || |||| ||| ||||||||||||||||| |||||||||    
T  14432661 tgttttggcctactcatgaaactggtcatgccattttaaaacagaataaaatggttcttcaattattatttttgttgcatttt 14432579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 41681190 - 41681272
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctacccccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||||||||||||||||| |||||| ||||| |||| |||||||||||||||||| ||||||||||    
T  41681190 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttttcgtcctacccccattttattctccaaaaac 41681272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 12571888 - 12572003
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta--cccccat 129  Q
    |||||||| |||||||  ||| ||||| || |||||||||||| |||||||||||| ||||||||| |||||| ||||| |||| ||||||  |||||||    
T  12571888 tgttttggcctactcacgaaactggttctacccttttaaaacagaacaaaacggtcattcaattatcatttttgttgcatttttcgtcctaaccccccat 12571987  T
Q  130 tttatcctccaaaaac 145  Q
    ||||| ||||||||||    
T  12571988 tttattctccaaaaac 12572003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 19176779 - 19176696
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||||||||||||||||| |||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  19176779 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaac 19176696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 31133276 - 31133359
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    ||||||||||||||||||||| ||||||||| ||| |||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  31133276 ccttttaaaacaaaacaaaacagtccttcaagtatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaac 31133359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 31133709 - 31133658
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  31133709 ccttttaaaacagaacaaaacggtccttcaattattatttttgttgcatttt 31133658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 13225159 - 13225077
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||| |||||||  ||| |||| ||  |||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  13225159 tgttttggcctactcacgaaactggtcttgcccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttt 13225077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 44831733 - 44831648
Alignment:
Q  65 cttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaacaca 148  Q
    ||||||||||| |||||||||||  ||||||||| |||||| ||||| |||| |||||| |||||||||||| |||||||||||||    
T  44831733 cttttaaaacagaacaaaacggttattcaattatcatttttgttgcatttttggtcctaccccccattttattctccaaaaacaca 44831648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 9928965 - 9929016
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  9928965 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttt 9929016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 19176346 - 19176397
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  19176346 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttt 19176397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 33328214 - 33328297
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctaccc-ccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||||||||||||| ||| |||||| ||||| |||| ||||||||| | ||||||| ||||||||||    
T  33328214 ccttttaaaacagaacaaaacggtccttcaagtatcatttttgttgcatttttcgtcctaccctcgattttattctccaaaaac 33328297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 41681623 - 41681572
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  41681623 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttt 41681572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 11656511 - 11656593
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaa 144  Q
    |||||||||||  |||||||||||||||||||||  |||||| ||||| |||| |||||| |||||||||||| |||||||||    
T  11656511 ccttttaaaactgaacaaaacggtccttcaattaccatttttgttgcatttttcgtcctaccccccattttattctccaaaaa 11656593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 12572339 - 12572289
Alignment:
Q  65 cttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    ||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  12572339 cttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttt 12572289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 33328628 - 33328578
Alignment:
Q  65 cttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    ||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  33328628 cttttaaaacataacaaaacggtccttcaattatcatttttgttgcatttt 33328578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 145
Target Start/End: Complemental strand, 33743406 - 33743325
Alignment:
Q  66 ttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||| |||||||||||  ||||||||| |||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  33743406 ttttaaaacagaacaaaacggtttttcaattatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaac 33743325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 4629853 - 4629904
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||| | |||||||||||| ||||||||| ||||||||||||||||    
T  4629853 ccttttaaaatagaacaaaacggtcattcaattatcatttttattgcatttt 4629904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 11656946 - 11656895
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| ||||||| |||||||||||||| |||||| |||||||||    
T  11656946 ccttttaaaacagaacaaaatggtccttcaattatcatttttgttgcatttt 11656895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 13224696 - 13224779
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| ||||||||  |||||||||||| |||||| ||| | |||| |||||| |||||||||||| ||||||||||    
T  13224696 ccttttaaaacagaacaaaacaatccttcaattatcatttttgttgaatttttcgtcctaccccccattttattctccaaaaac 13224779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 44831303 - 44831354
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||||||| ||||| |||||| |||||||||    
T  44831303 ccttttaaaacagaacaaaacggtccttccattatcatttttgttgcatttt 44831354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 145
Target Start/End: Complemental strand, 9178120 - 9178042
Alignment:
Q  68 ttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctacccccattttatcctccaaaaac 145  Q
    |||||||| |||||||||||||||||| ||| |||||| ||||| ||||  || |||||||||||||| ||| ||||||    
T  9178120 ttaaaacagaacaaaacggtccttcaagtatcatttttgttgcatttttcatcttacccccattttattctcaaaaaac 9178042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 34541036 - 34540986
Alignment:
Q  65 cttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    ||||||||||| ||||||| |||||||||||||| |||||| |||||||||    
T  34541036 cttttaaaacataacaaaatggtccttcaattatcatttttgttgcatttt 34540986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 143
Target Start/End: Complemental strand, 9930146 - 9930065
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttta-gtcctaccccc-attttatcctccaaaa 143  Q
    |||||||||| | ||||||| |||||||||| ||| |||||| |||||||||  ||||||||||| ||||||| ||||||||    
T  9930146 ccttttaaaatagaacaaaatggtccttcaactatcatttttgttgcatttttcgtcctaccccccattttattctccaaaa 9930065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 11337011 - 11336960
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| || ||||||||| ||||||||| |||||| |||||||||    
T  11337011 ccttttaaaacagaataaaacggtctttcaattatcatttttgttgcatttt 11336960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 33 - 145
Target Start/End: Complemental strand, 15828161 - 15828047
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccatt 130  Q
    |||||||| |||||||  ||| ||||  || ||||||||||||||||||||||||||||||||||| |||||| ||||| |||| |||||| ||||||||    
T  15828161 tgttttggcctactcacgaaactggtcatacccttttaaaacaaaacaaaacggtccttcaattatcatttttgttgcatttttcgtcctaccccccatt 15828062  T
Q  131 ttatcctccaaaaac 145  Q
    |||| ||||||||||    
T  15828061 ttattctccaaaaac 15828047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 18296201 - 18296283
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctacccccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||| |||||||| |||| |||||| ||||| |||| |||||||||||||||||||||||||||||    
T  18296201 ccttttaaaacagaacaaaaccgtccttcatttatcatttttgttgcatttttcgtcctacccccattttatcctccaaaaac 18296283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 31470843 - 31470722
Alignment:
Q  26 gtccttttgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-c 123  Q
    |||||| |||||| | |||||||  ||| ||||| |  |||||||||||| |||||||||||||||||||||| |||||| ||||| |||| |||||| |    
T  31470843 gtccttgtgttttagcctactcacgaaactggttctgcccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttttcgtcctacc 31470744  T
Q  124 ccccattttatcctccaaaaac 145  Q
    ||||||||||| ||||||||||    
T  31470743 ccccattttattctccaaaaac 31470722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 10900419 - 10900336
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||||||||||||||||| |||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  10900419 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaac 10900336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 64 - 194
Target Start/End: Original strand, 29033490 - 29033623
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcat-tttagtcctaccccca--ttttatcctccaaaaacacacatgtatcaaat 160  Q
    |||||||||||| |||||||| |||||||| |||| |||||| |||||  |||  ||||||||||   |||| |||||||||||| ||||||| ||| ||    
T  29033490 ccttttaaaacagaacaaaactgtccttcagttatcatttttgttgcacatttcatcctaccccccatttttttcctccaaaaacgcacatgtgtcagat 29033589  T
Q  161 ttttaactgatgtgacaaaaagaacacatatgtg 194  Q
    |||||||||||||| |||| | ||||| ||||||    
T  29033590 ttttaactgatgtggcaaataaaacacctatgtg 29033623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 143
Target Start/End: Complemental strand, 2322738 - 2322626
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctacccc-catt 130  Q
    ||||||||||||||||  ||| | || ||  | |||||||||| |||||||||||||||||||||| |||||| ||||| |||| |||||||||| ||||    
T  2322738 tgttttggtctactcacgaaactagtcttgcctttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttttcgtcctacccctcatt 2322639  T
Q  131 ttatcctccaaaa 143  Q
    |||| ||||||||    
T  2322638 ttattctccaaaa 2322626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 66 - 145
Target Start/End: Original strand, 28472695 - 28472775
Alignment:
Q  66 ttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttta-gtcctacccccattttatcctccaaaaac 145  Q
    |||||||||| ||||||| |||| ||||||||| |||||| |||||||||  |||||||||||||||||| ||||||||||    
T  28472695 ttttaaaacagaacaaaatggtcattcaattatcatttttgttgcatttttcgtcctacccccattttattctccaaaaac 28472775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 66 - 145
Target Start/End: Original strand, 29859884 - 29859964
Alignment:
Q  66 ttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttta-gtcctacccccattttatcctccaaaaac 145  Q
    |||||||||| ||||||| |||| ||||||||| |||||| |||||||||  |||||||||||||||||| ||||||||||    
T  29859884 ttttaaaacagaacaaaatggtcattcaattatcatttttgttgcatttttcgtcctacccccattttattctccaaaaac 29859964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 2319728 - 2319811
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||||||||||||||||| |||||| ||||| |||| |||||| |||||||||||| ||||| ||||    
T  2319728 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttttcgtcctaccccccattttattctccagaaac 2319811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 11277071 - 11276988
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| ||||||||||| |||||||||| |||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  11277071 ccttttaaaacagaacaaaacggttcttcaattatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaac 11276988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 18257193 - 18257276
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||||||||||||||||| |||||| ||||| |||| ||| || |||||||||||| ||||||||||    
T  18257193 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttttcgtcataccccccattttattctccaaaaac 18257276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 10899995 - 10900046
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  10899995 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttt 10900046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 12935213 - 12935264
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  12935213 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttt 12935264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 18257626 - 18257575
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| ||||||||||||||||||||||||||||| || ||||||    
T  18257626 ccttttaaaacagaacaaaacggtccttcaattattatttttgttacatttt 18257575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 18505408 - 18505329
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaa 141  Q
    |||||||||||| |||||||| ||||||||||||| |||||| ||||| |||| |||||| |||||||||||| ||||||    
T  18505408 ccttttaaaacataacaaaacagtccttcaattatcatttttgttgcatttttcgtcctaccccccattttattctccaa 18505329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 20741156 - 20741239
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| ||||||| |||||||||| ||| |||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  20741156 ccttttaaaacagaacaaaatggtccttcaaatatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaac 20741239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 22219842 - 22219791
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  22219842 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttt 22219791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 23075617 - 23075566
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  23075617 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttt 23075566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 144
Target Start/End: Complemental strand, 1149921 - 1149839
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaa 144  Q
    |||||||||| | |||||||||||||||||||||  |||||| ||||| |||| |||||| |||||||||||| |||||||||    
T  1149921 ccttttaaaatagaacaaaacggtccttcaattaccatttttgttgcatttttcgtcctaccccccattttattctccaaaaa 1149839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 4811743 - 4811694
Alignment:
Q  66 ttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  4811743 ttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttt 4811694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 11445474 - 11445425
Alignment:
Q  66 ttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  11445474 ttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttt 11445425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 12935641 - 12935560
Alignment:
Q  69 taaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaacaca 148  Q
    ||||||| |||||||||||||||||||||| |||||| || || |||| |||||| |||||||||||| ||||| |||||||    
T  12935641 taaaacagaacaaaacggtccttcaattatcatttttgttacatttttcgtcctaccccccattttattctccataaacaca 12935560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 148
Target Start/End: Original strand, 11445046 - 11445129
Alignment:
Q  67 tttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctaccc-ccattttatcctccaaaaacaca 148  Q
    ||||||||| || |||| |||||||||||||| |||||| ||||| |||| ||||||||| ||||||||| ||| |||||||||    
T  11445046 tttaaaacagaataaaatggtccttcaattatcatttttgttgcatttttcgtcctaccctccattttattctctaaaaacaca 11445129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 115
Target Start/End: Original strand, 11276615 - 11276697
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    ||||||||||||||||| ||| || |  || |||||||||||| ||||||| |||||||||||| | |||||| || ||||||    
T  11276615 tgttttggtctactcatgaaactgatcctacccttttaaaacagaacaaaatggtccttcaattgtcatttttgtttcatttt 11276697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 31470372 - 31470422
Alignment:
Q  65 cttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    ||||||||||| |||||||| ||| |||||||||||||||| |||||||||    
T  31470372 cttttaaaacagaacaaaacagtcattcaattattatttttgttgcatttt 31470422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 20741593 - 20741552
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattattttt 105  Q
    |||||||||||| |||||||||||||||||||||| ||||||    
T  20741593 ccttttaaaacagaacaaaacggtccttcaattatcattttt 20741552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 142
Target Start/End: Complemental strand, 3835212 - 3835135
Alignment:
Q  67 tttaaaacaaaacaaaacggtccttcaattattatttttattgcatttta-gtcctaccccc-attttatcctccaaa 142  Q
    ||||||||| |||||||  |||||| |||||| |||||| | |||||||  ||||||||||| |||||||||||||||    
T  3835212 tttaaaacagaacaaaattgtcctttaattatcatttttgtggcatttttcgtcctaccccccattttatcctccaaa 3835135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 115
Target Start/End: Original strand, 15827663 - 15827747
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaa--acggtccttcaattattatttttattgcatttt 115  Q
    ||||||||  ||||||  ||| ||||| | ||||||||||||| ||||||  |||||||||||| ||| |||||| |||||||||    
T  15827663 tgttttggcttactcacgaaactggttctgtccttttaaaacataacaaattacggtccttcaactatcatttttgttgcatttt 15827747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 18504977 - 18505026
Alignment:
Q  66 ttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||| ||||||||||| |||||||||| |||||| || ||||||    
T  18504977 ttttaaaacagaacaaaacggttcttcaattatcatttttgtttcatttt 18505026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 23074055 - 23074096
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattattttt 105  Q
    |||||||||| | |||||||||||||||||||||| ||||||    
T  23074055 ccttttaaaatagaacaaaacggtccttcaattatcattttt 23074096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 115
Target Start/End: Original strand, 4811399 - 4811479
Alignment:
Q  35 ttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    ||||||||||||||  ||| ||||  |  |||||||||| | || ||||||||||||||||||| |||||| || ||||||    
T  4811399 ttttggtctactcacgaaactggtcatgcccttttaaaatagaataaaacggtccttcaattatcatttttgtttcatttt 4811479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 150
Target Start/End: Complemental strand, 29035126 - 29035038
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctaccc-ccattttatcctccaaaaacacaca 150  Q
    |||||||||||| |||||||  |||||| | |||| |||||| ||||| |||| |||| |||| ||||||| |||||||||||| ||||    
T  29035126 ccttttaaaacagaacaaaattgtcctttagttatcatttttgttgcatttttcgtcccaccctccattttttcctccaaaaacgcaca 29035038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 18853 - 18973
Alignment:
Q  26 gtccttttgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctacc 124  Q
    |||||| |||||||| |||||||  ||| |||| ||  |||||||||||| ||||||||||| |||||||||| |||||| ||||| ||||  |||||||    
T  18853 gtccttctgttttggcctactcacgaaactggtcttgcccttttaaaacataacaaaacggtgcttcaattatcatttttgttgcatttttcatcctacc 18952  T
Q  125 cccattttatcctccaaaaac 145  Q
    |||||||||| ||||||||||    
T  18953 cccattttattctccaaaaac 18973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 19110 - 19069
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattattttt 105  Q
    |||||||||||| |||||||||||||||||||||| ||||||    
T  19110 ccttttaaaacagaacaaaacggtccttcaattatcattttt 19069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 46)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 64 - 199
Target Start/End: Complemental strand, 32697189 - 32697053
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttta-gtcctacccccattttatcctccaaaaacacacatgtatcaaattt 162  Q
    |||||||||||| |||||||  || |||||||||| |||||| |||||||||  |||||||||||||||||||||||||||||    |||| ||| | ||    
T  32697189 ccttttaaaacagaacaaaattgtgcttcaattatcatttttgttgcatttttcgtcctacccccattttatcctccaaaaacgttgatgtgtcagaatt 32697090  T
Q  163 ttaactgatgtgacaaaaagaacacatatgtgacaat 199  Q
    |||||||||||| | || ||||||| |||||| ||||    
T  32697089 ttaactgatgtggccaatagaacacctatgtggcaat 32697053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 5137036 - 5137119
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||||||||||||||||| |||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  5137036 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaac 5137119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 37726985 - 37727068
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||||||||||||||||| |||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  37726985 ccttttaaaacataacaaaacggtccttcaattatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaac 37727068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 41046756 - 41046839
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||||||||||||||||| |||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  41046756 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaac 41046839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 43973497 - 43973580
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||||||||||||||||| |||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  43973497 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaac 43973580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 33 - 145
Target Start/End: Complemental strand, 25853747 - 25853633
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccatt 130  Q
    ||||||| ||||||||  ||| |||| || || |||||||||| ||||||| |||||||||||||| |||||| ||||| |||| |||||| ||||||||    
T  25853747 tgttttgctctactcacgaaactggtcttgtcattttaaaacagaacaaaatggtccttcaattatcatttttgttgcatttttcgtcctaccccccatt 25853648  T
Q  131 ttatcctccaaaaac 145  Q
    |||| ||||||||||    
T  25853647 ttattctccaaaaac 25853633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 199
Target Start/End: Complemental strand, 25612466 - 25612329
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttta-gtcctaccccc-attttatcctccaaaaacacacatgtatcaaatt 161  Q
    |||||||||| | |||||||| ||| || |||||| |||||| |||||||||  ||||||||||| |||||||||||||||||| |  |||| ||||| |    
T  25612466 ccttttaaaatagaacaaaactgtcttttaattatcatttttgttgcatttttcgtcctaccccccattttatcctccaaaaacgctgatgtgtcaaaat 25612367  T
Q  162 tttaactgatgtgacaaaaagaacacatatgtgacaat 199  Q
    ||||||||||||| | || | ||||| |||||| ||||    
T  25612366 tttaactgatgtggccaataaaacacctatgtggcaat 25612329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 66 - 145
Target Start/End: Original strand, 48453047 - 48453128
Alignment:
Q  66 ttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||| |||||||||||||||||||||| |||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  48453047 ttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaac 48453128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 33 - 144
Target Start/End: Complemental strand, 17465012 - 17464898
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgca--ttttagtccta-cccccat 129  Q
    |||||||| |||| ||| ||| |||| | | |||||||||| | |||||||||||||||||||||| |||||| |||||  |||| |||||| |||||||    
T  17465012 tgttttggcctacgcatgaaactggtctgacccttttaaaatagaacaaaacggtccttcaattatcatttttgttgcatttttttgtcctaccccccat 17464913  T
Q  130 tttatcctccaaaaa 144  Q
    ||||| |||||||||    
T  17464912 tttattctccaaaaa 17464898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 153
Target Start/End: Complemental strand, 23228496 - 23228406
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctacc-cccattttatcctccaaaaacacacatgt 153  Q
    ||||||||||| || |||||  ||||||||||||| |||||||||||| |||| |||||||| ||||||||||||||||||||||| |||||    
T  23228496 ccttttaaaacgaa-caaaattgtccttcaattatcatttttattgcatttttcgtcctacctcccattttatcctccaaaaacacccatgt 23228406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 134
Target Start/End: Original strand, 30104538 - 30104609
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctacccccattttat 134  Q
    ||||||||||||||| | ||||||||||||||||| |||||| ||||| |||| ||||||||||||||||||    
T  30104538 ccttttaaaacaaaatagaacggtccttcaattatcatttttgttgcatttttcgtcctacccccattttat 30104609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 31779141 - 31779058
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||||||||||||||||| |||||| ||||| |||| |||| | |||||||||||| ||||||||||    
T  31779141 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttttcgtcccaccccccattttattctccaaaaac 31779058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 145
Target Start/End: Original strand, 23644520 - 23644601
Alignment:
Q  66 ttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||| |||||||| ||||||||||||| |||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  23644520 ttttaaaacagaacaaaacagtccttcaattatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaac 23644601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 145
Target Start/End: Complemental strand, 24301043 - 24300962
Alignment:
Q  66 ttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    ||||||||||||||||||||||||||| | ||| |||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  24301043 ttttaaaacaaaacaaaacggtccttcgagtatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaac 24300962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 22424869 - 22424921
Alignment:
Q  63 tccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    ||||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  22424869 tccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttt 22424921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 64 - 143
Target Start/End: Complemental strand, 26275055 - 26274975
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcattttagtcctac-ccccattttatcctccaaaa 143  Q
    |||||||||||| || |||||||||| |||||||| |||||| |||| |||| ||||||| ||||||||||| ||||||||    
T  26275055 ccttttaaaacagaataaaacggtccctcaattatcatttttgttgctttttcgtcctaccccccattttattctccaaaa 26274975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 17464547 - 17464598
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  17464547 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttt 17464598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 22425302 - 22425219
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||| ||||||| ||||||||||| |||||||||| |||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  22425302 ccttgtaaaacagaacaaaacggtacttcaattatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaac 22425219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 26274623 - 26274674
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  26274623 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttt 26274674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 32535452 - 32535365
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattat-----tatttttattgca-ttttagtcctacccccattttatcctccaaaaac 145  Q
    |||||||||||| ||||||||||||||||||||||      |||||| ||||| |||| |||||||||||||||||| ||||||||||    
T  32535452 ccttttaaaacagaacaaaacggtccttcaattatcattaaatttttgttgcatttttcgtcctacccccattttattctccaaaaac 32535365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 39556066 - 39555983
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| ||||||| |||||||||||||| |||||  ||||| |||| |||||| |||||||||||| ||||||||||    
T  39556066 ccttttaaaacagaacaaaatggtccttcaattatcattttcgttgcatttttcgtcctaccccccattttattctccaaaaac 39555983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 5137501 - 5137419
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||| |||||||| ||| ||||| |  |||||||||| | ||||||| |||||||||||||| |||||| |||||||||    
T  5137501 tgttttggcctactcatgaaactggttctgcccttttaaaatagaacaaaatggtccttcaattatcatttttgttgcatttt 5137419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 23644985 - 23644903
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||| |||||||  ||| ||||  || |||||||||||| |||||||||||| ||||||||| |||||| |||||||||    
T  23644985 tgttttggcctactcacgaaattggtcctacccttttaaaacagaacaaaacggtcattcaattatcatttttgttgcatttt 23644903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 27393719 - 27393781
Alignment:
Q  66 ttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctaccccc 127  Q
    |||||||||| |||||||||||||||||||||| |||||| ||||| |||| |||||||||||    
T  27393719 ttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttttcgtcctaccccc 27393781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 115
Target Start/End: Original strand, 31778678 - 31778760
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    ||||||||||||||||| ||| ||||  |  |||||||||||| ||||||||||||||||  |||| |||||| |||||||||    
T  31778678 tgttttggtctactcatgaaactggtcctgcccttttaaaacagaacaaaacggtccttcgtttatcatttttgttgcatttt 31778760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 37727418 - 37727368
Alignment:
Q  65 cttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    ||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  37727418 cttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttt 37727368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 43973960 - 43973878
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||| |||||||  ||| ||||| |  |||||||||||| |||||||||||| ||||||||| |||||| |||||||||    
T  43973960 tgttttggcctactcacgaaactggttctgcccttttaaaacagaacaaaacggtcattcaattatcatttttgttgcatttt 43973878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 20841048 - 20840999
Alignment:
Q  66 ttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  20841048 ttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttt 20840999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 145
Target Start/End: Complemental strand, 27394064 - 27393983
Alignment:
Q  66 ttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt-agtcctaccccc-attttatcctccaaaaac 145  Q
    |||||||||| ||||||||| |||||||||||| |||||| |||||||||   |||||||||| ||||||| ||||||||||    
T  27394064 ttttaaaacagaacaaaacgatccttcaattatcatttttgttgcattttccatcctacccccaattttattctccaaaaac 27393983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 32535017 - 32535066
Alignment:
Q  66 ttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  32535017 ttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttt 32535066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 50116898 - 50116781
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctaccccc-attttatcctccaaaaacacacatgtatcaaatt 161  Q
    |||||| ||| | |||||||||||| |||| |||| |||||| ||||| |||| ||||||||||| ||||| |||||||||||| ||||  |  || |||    
T  50116898 ccttttgaaagagaacaaaacggtcattcagttatcatttttgttgcaattttcgtcctaccccccattttttcctccaaaaacgcacaaatggcagatt 50116799  T
Q  162 tttaactgatgtgacaaa 179  Q
    ||||||||||||| ||||    
T  50116798 tttaactgatgtggcaaa 50116781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 20840618 - 20840693
Alignment:
Q  66 ttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctcc 139  Q
    |||||||| | |||||||||||||||||||||| |||||| ||||| |||| |||||| |||||||||||| ||||    
T  20840618 ttttaaaatagaacaaaacggtccttcaattatcatttttgttgcatttttcgtcctaccccccattttattctcc 20840693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 193
Target Start/End: Complemental strand, 25420630 - 25420499
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaacacacatgtatcaaatt 161  Q
    |||||||||| | || ||||  |||||||||||||||||||| ||||| |||| ||| || ||||||||||||||| ||||||  || |||| | | | |    
T  25420630 ccttttaaaatagaataaaattgtccttcaattattatttttgttgcatttttcgtcataccccccattttatccttcaaaaatgcagatgtgttagaat 25420531  T
Q  162 tttaactgatgtgacaaaaagaacacatatgt 193  Q
    ||||||||||||| | || ||||||| |||||    
T  25420530 tttaactgatgtggccaatagaacacctatgt 25420499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 25853290 - 25853341
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||| | |||||||||||||||||||||| |||||| |||||||||    
T  25853290 ccttttaaaatagaacaaaacggtccttcaattatcatttttgttgcatttt 25853341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 29801412 - 29801463
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||||||||| ||| |||||| |||||||||    
T  29801412 ccttttaaaacagaacaaaacggtccttcaagtatcatttttgttgcatttt 29801463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 29801905 - 29801854
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||| ||||||||| |||||| |||||||||    
T  29801905 ccttttaaaacagaacaaaacggtctttcaattatcatttttgttgcatttt 29801854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 30098252 - 30098201
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| ||||||| |||||||||||||| |||||| |||||||||    
T  30098252 ccttttaaaacagaacaaaatggtccttcaattatcatttttgttgcatttt 30098201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 4275852 - 4275802
Alignment:
Q  65 cttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    ||||||||||| ||||||||||||||| |||||| |||||| |||||||||    
T  4275852 cttttaaaacagaacaaaacggtcctttaattatcatttttgttgcatttt 4275802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 145
Target Start/End: Original strand, 37220614 - 37220696
Alignment:
Q  65 cttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctaccc-ccattttatcctccaaaaac 145  Q
    ||||||||||| || ||||  |||||||| |||| |||||| ||||| |||| ||||||||| ||||||||||||||||||||    
T  37220614 cttttaaaacagaataaaattgtccttcagttatcatttttgttgcacttttcgtcctaccctccattttatcctccaaaaac 37220696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 41047218 - 41047137
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||| |||||||  ||| ||||| | ||||||||||||| || |||||| |||||||||||| |||||| |||||||||    
T  41047218 tgttttggcctactcacgaaactggttctgtccttttaaaacagaataaaacg-tccttcaattatcatttttgttgcatttt 41047137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 39555636 - 39555685
Alignment:
Q  66 ttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||| ||||||| |||||||||||||| |||||| |||||||||    
T  39555636 ttttaaaacagaacaaaatggtccttcaattatcatttttgttgcatttt 39555685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 51474823 - 51474739
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctaccccca--ttttatcctccaaaaac 145  Q
    |||||||||||| |||||||  |||||| | |||| |||||| ||||| |||| ||||||||||||  |||||||||||||||||    
T  51474823 ccttttaaaacataacaaaattgtcctttagttatcatttttgttgcatttttcgtcctacccccaatttttatcctccaaaaac 51474739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 208
Target Start/End: Original strand, 32695761 - 32695903
Alignment:
Q  66 ttttaaaacaaaacaaaacggtccttcaattattatttttattgc-attttagtcc-tacccccattttatcctccaaaaacacacatgtatcaaatttt 163  Q
    |||||||||| |||||||  ||||| | |||||||||||| |||| |||||||||| ||||| ||||||| |||||||||||||  |||| ||  |||||    
T  32695761 ttttaaaacagaacaaaattgtcctacgattattatttttgttgcaattttagtccttaccctcatttta-cctccaaaaacactgatgtgtcgcatttt 32695859  T
Q  164 taactgatgtgacaaaaagaacacatatgtgacaattcccacatg 208  Q
    |   ||| ||| |||||| ||||| || ||||||||||| |||||    
T  32695860 ttgatgaggtgtcaaaaa-aacacttaggtgacaattccaacatg 32695903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 26837416 - 26837467
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    ||||||| |||| ||| |||||||||||||||||| |||||| |||||||||    
T  26837416 ccttttataacataacgaaacggtccttcaattatcatttttgttgcatttt 26837467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 144
Target Start/End: Complemental strand, 26837842 - 26837763
Alignment:
Q  67 tttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaa 144  Q
    ||||||| | |||||||||||| ||||| ||| |||||| ||||| |||| |||||| |||||||||||| |||||||||    
T  26837842 tttaaaatagaacaaaacggtcattcaagtatcatttttgttgcattttttgtcctaccccccattttattctccaaaaa 26837763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 24300611 - 24300659
Alignment:
Q  63 tccttttaaaacaaaacaaaacggtccttcaattattatttttattgca 111  Q
    ||||||||||||| || |||||||| |||||||||| |||||| |||||    
T  24300611 tccttttaaaacagaataaaacggttcttcaattatcatttttgttgca 24300659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 29869676 - 29869759
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctac-ccccattttatcctccaaaaac 145  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||| |||| ||||||| ||||||||||| ||||||||||    
T  29869676 ccttttaaaacagaacaaaacggtccttcaattattatttttgttgcatttttcgtcctacaccccattttattctccaaaaac 29869759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 18984144 - 18984258
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccatt 130  Q
    ||||||||||||||||  ||| ||||  |  |||||||||||| |||||||||||||||||||||| |||||| ||||| |||| |||||| ||||||||    
T  18984144 tgttttggtctactcacgaaactggtcctgcccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttttcgtcctaccccccatt 18984243  T
Q  131 ttatcctccaaaaac 145  Q
    |||| ||||||||||    
T  18984244 ttattctccaaaaac 18984258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 29306978 - 29307092
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccatt 130  Q
    |||||||| |||||||  ||| ||||  | ||||||||||||| |||||||||||||||||||||| |||||| ||||| |||| |||||| ||||||||    
T  29306978 tgttttggcctactcacgaaactggtcatgtccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttttcgtcctaccccccatt 29307077  T
Q  131 ttatcctccaaaaac 145  Q
    |||| ||||||||||    
T  29307078 ttattctccaaaaac 29307092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 64 - 194
Target Start/End: Original strand, 52268346 - 52268478
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctaccccc-attttatcctccaaaaacacacatgtatcaaatt 161  Q
    |||||||||||| |||||||| ||| |||| |||| |||||| ||||| |||| ||||||||||| ||||| ||||||||||||  |||||| ||| |||    
T  52268346 ccttttaaaacagaacaaaactgtcattcagttatcatttttgttgcacttttcgtcctaccccccattttttcctccaaaaacggacatgtgtcagatt 52268445  T
Q  162 tttaactgatgtgacaaaaagaacacatatgtg 194  Q
    || |||||||||| |||| | ||||| ||||||    
T  52268446 ttaaactgatgtggcaaataaaacacttatgtg 52268478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 15646684 - 15646601
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctaccccc-attttatcctccaaaaac 145  Q
    |||||||||||| |||||||||||||||||||||| |||||| ||||| |||| ||||||||||| ||||||| ||||||||||    
T  15646684 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttttcgtcctacccccaattttattctccaaaaac 15646601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 50970767 - 50970684
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||||||||||||||||| |||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  50970767 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaac 50970684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 33 - 145
Target Start/End: Complemental strand, 5540338 - 5540224
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccatt 130  Q
    |||||||| |||||||  ||| ||||  | ||||||||||||| || ||||||||||||||||||| |||||| ||||| |||| |||||| ||||||||    
T  5540338 tgttttggcctactcacgaaactggtcctgtccttttaaaacagaagaaaacggtccttcaattatcatttttgttgcatttttcgtcctaccccccatt 5540239  T
Q  131 ttatcctccaaaaac 145  Q
    |||| ||||||||||    
T  5540238 ttattctccaaaaac 5540224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 8678597 - 8678648
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  8678597 ccttttaaaacaaaacaaaacggtccttcaattatcatttttgttgcatttt 8678648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 26859548 - 26859466
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctacccccattttatcctccaaaaac 145  Q
    |||||||||||| ||||| |||||||||||||||| |||||| ||||| |||| |||||||||||  ||||| ||||||||||    
T  26859548 ccttttaaaacagaacaatacggtccttcaattatcatttttgttgcatttttcgtcctaccccccatttattctccaaaaac 26859466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 144
Target Start/End: Complemental strand, 8679030 - 8678949
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctacccccattttatcctccaaaaa 144  Q
    |||||||||||| ||||||| |||| ||||||||| |||||| ||||| |||| |||||||| ||||||||| |||||||||    
T  8679030 ccttttaaaacagaacaaaaaggtcattcaattatcatttttgttgcatttttcgtcctacctccattttattctccaaaaa 8678949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 18984646 - 18984557
Alignment:
Q  26 gtccttttgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||| |||||||| |||||||  ||| ||||  |  |||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  18984646 gtccttgtgttttggcctactcacgaaattggtcctgcccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttt 18984557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 9019029 - 9019112
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||||||| ||||| ||| |||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  9019029 ccttttaaaacagaacaaaacggtcattcaactatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaac 9019112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 17433272 - 17433355
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||||||||||||| ||| |||||| ||||| ||||  ||||| |||||||||||| ||||||||||    
T  17433272 ccttttaaaacagaacaaaacggtccttcaagtatcatttttgttgcatttttcatcctaccccccattttattctccaaaaac 17433355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 17433704 - 17433653
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  17433704 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttt 17433653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 21856098 - 21856149
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  21856098 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttt 21856149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 29307431 - 29307380
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  29307431 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttt 29307380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 39154075 - 39154158
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||||||||| ||||||| |||||| ||||| |||| |||||| |||||||| ||| ||||||||||    
T  39154075 ccttttaaaacagaacaaaacggtcctgcaattatcatttttgttgcatttttcgtcctaccccccattctattctccaaaaac 39154158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 29870139 - 29870057
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||| |||||||| ||| ||||  |  | |||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  29870139 tgttttggcctactcatgaaactggtcctgccattttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttt 29870057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 145
Target Start/End: Complemental strand, 21856530 - 21856449
Alignment:
Q  66 ttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctac-ccccattttatcctccaaaaac 145  Q
    |||||||||| |||||||||||||||||| ||| ||||||  |||| |||| ||||||| ||||||||||| ||||||||||    
T  21856530 ttttaaaacagaacaaaacggtccttcaagtatcatttttgctgcatttttcgtcctactccccattttattctccaaaaac 21856449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 26859117 - 26859166
Alignment:
Q  66 ttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  26859117 ttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttt 26859166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 33143973 - 33144034
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcat-tttagtcctacc 124  Q
    |||||||||||| |||||||||||||||||||||| |||||| |||||| ||| ||||||||    
T  33143973 ccttttaaaacagaacaaaacggtccttcaattatcattttttttgcatatttcgtcctacc 33144034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 4636460 - 4636409
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| ||||||||| |||||||||||| |||||| |||||||||    
T  4636460 ccttttaaaacagaacaaaacgatccttcaattatcatttttgttgcatttt 4636409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 5539872 - 5539923
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||||||||||||| |||||| ||| |||||    
T  5539872 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgtatttt 5539923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 5963067 - 5962984
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttta-gtcctaccccc-attttatcctccaaaaac 145  Q
    |||||||||| | |||||||| ||| ||||||||| |||||| |||||||||  ||||||||||| ||||||| ||||||||||    
T  5963067 ccttttaaaatagaacaaaacagtctttcaattatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaac 5962984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 15173152 - 15173235
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    ||||||||||   ||||||||||| |||||||||| |||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  15173152 ccttttaaaattgaacaaaacggttcttcaattatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaac 15173235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 15173583 - 15173532
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| ||||||| |||||||||||||| |||||| |||||||||    
T  15173583 ccttttaaaacagaacaaaatggtccttcaattatcatttttgttgcatttt 15173532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 33144408 - 33144325
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| ||||||| || ||||||| ||| |||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  33144408 ccttttaaaacagaacaaaatggaccttcaaatatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaac 33144325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 9019483 - 9019401
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||  ||||||| |||| ||||| |  | |||||||||| |||||||||||| ||||||||| |||||| |||||||||    
T  9019483 tgttttgacctactcacaaaactggttctgccattttaaaacagaacaaaacggtcattcaattatcatttttgttgcatttt 9019401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 39154508 - 39154458
Alignment:
Q  65 cttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    ||||||||||| ||||||| |||||||||||||| |||||| |||||||||    
T  39154508 cttttaaaacataacaaaatggtccttcaattatcatttttgttgcatttt 39154458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 50970335 - 50970385
Alignment:
Q  65 cttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||| || |||||||||||||||||||||| |||||| |||||||||    
T  50970335 cttttaaatcagaacaaaacggtccttcaattatcatttttgttgcatttt 50970385  T

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Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 5962634 - 5962685
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||| ||||| ||| |||||| |||||||||    
T  5962634 ccttttaaaacagaacaaaacggtctttcaactatcatttttgttgcatttt 5962685  T

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Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 15646248 - 15646299
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| ||||||| ||| |||||||||| |||||| |||||||||    
T  15646248 ccttttaaaacagaacaaaatggtacttcaattatcatttttgttgcatttt 15646299  T

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Target: scaffold0027 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 145
Target Start/End: Complemental strand, 42678 - 42565
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctacccccattt 131  Q
    ||||||||||||||||  ||| || || |  |||||||||||| ||||||||||||||||| |||| |||||| || || |||| |||||||||||||||    
T  42678 tgttttggtctactcaggaaactgattctgcccttttaaaacagaacaaaacggtccttcagttatcatttttgtttcatttttcgtcctacccccattt 42579  T
Q  132 tatcctccaaaaac 145  Q
    ||| ||||||||||    
T  42578 tattctccaaaaac 42565  T

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Target: scaffold0027; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 42227 - 42276
Alignment:
Q  66 ttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||| |||||||||||| ||||||||| |||||| |||||||||    
T  42227 ttttaaaacagaacaaaacggtcattcaattatcatttttgttgcatttt 42276  T

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Target: scaffold0295 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 4849 - 4932
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||||||||||||||||| |||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  4849 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaac 4932  T

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Target: scaffold0295; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 5311 - 5229
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||| ||| |||  ||| |||| || ||||||||||||| || ||||||||  ||||||||| |||||| |||||||||    
T  5311 tgttttggcctagtcacgaaactggtcttgtccttttaaaacagaataaaacggtaattcaattatcatttttgttgcatttt 5229  T

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Target: scaffold0273 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 4696 - 4610
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaacaca 148  Q
    |||||||||||| ||||||||||||||| |||||| |||||| ||||| |||| |||||| |||||||||||| |||||||||||||    
T  4696 ccttttaaaacagaacaaaacggtcctttaattatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaacaca 4610  T

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Target: scaffold0273; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 4259 - 4310
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  4259 ccttttaaaacaaaacaaaacggtccttcaattatcatttttgttgcatttt 4310  T

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Target: scaffold0007 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 64358 - 64441
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||||||||||||||||| |||||| ||||| |||| ||| || |||||||||||| ||||||||||    
T  64358 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatttttcgtcataccccccattttattctccaaaaac 64441  T

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Target: scaffold0007; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 64794 - 64743
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| ||||||||||||||| |||||| |||||| |||||||||    
T  64794 ccttttaaaacagaacaaaacggtcctttaattatcatttttgttgcatttt 64743  T

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Target: scaffold1696 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold1696
Description:

Target: scaffold1696; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 145
Target Start/End: Original strand, 506 - 587
Alignment:
Q  65 cttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctacccccattttatcctccaaaaac 145  Q
    |||||||||||||||| ||  ||||||||||||| |||||| ||||| |||| ||||||| |||||||||||||| ||||||    
T  506 cttttaaaacaaaacataatcgtccttcaattatcatttttgttgcatttttcgtcctacacccattttatcctcaaaaaac 587  T

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Target: scaffold0417 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 144
Target Start/End: Original strand, 10646 - 10759
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctaccc-ccatt 130  Q
    |||||||| |||||||| ||| ||||  |  |||||||||||| |||||||||||||||||| ||| |||||  ||||| |||| ||||||||| |||||    
T  10646 tgttttggcctactcatgaaactggtcctgcccttttaaaacagaacaaaacggtccttcaagtatcattttcgttgcatttttcgtcctaccctccatt 10745  T
Q  131 ttatcctccaaaaa 144  Q
    |||| |||||||||    
T  10746 ttattctccaaaaa 10759  T

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Target: scaffold0417; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 11112 - 11061
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  11112 ccttttaaaacataacaaaacggtccttcaattatcatttttgttgcatttt 11061  T

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Target: scaffold1223 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold1223
Description:

Target: scaffold1223; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 809 - 891
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| |||||||||||||||||||||| | |||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  809 ccttttaaaacagaacaaaacggtccttcaattatca-ttttgttgcatttttcgtcctaccccccattttattctccaaaaac 891  T

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Target: scaffold1223; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 1230 - 1169
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcat-tttagtcctacc 124  Q
    |||||||||||| |||||||||||||||||||||| |||||| |||||| ||| ||||||||    
T  1230 ccttttaaaacagaacaaaacggtccttcaattatcatttttgttgcatctttcgtcctacc 1169  T

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Target: scaffold0951 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0951
Description:

Target: scaffold0951; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 1723 - 1806
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||| ||||||| | |||||||||||| |||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  1723 ccttttaaaacagaacaaaatgttccttcaattatcatttttgttgcatttttcgtcctaccccccattttattctccaaaaac 1806  T

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Target: scaffold0951; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 2156 - 2105
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||||| |||||||||||| ||||||||| |||||| |||||||||    
T  2156 ccttttaaaacagaacaaaacggtcattcaattatcatttttgttgcatttt 2105  T

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Target: scaffold0019 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 134162 - 134079
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||| ||| ||||||||| |||||||||||  |||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  134162 ccttttaatacagaacaaaacgatccttcaattaacatttttgttgcatttttcgtcctaccccccattttattctccaaaaac 134079  T

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Target: scaffold0076 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 8529 - 8451
Alignment:
Q  33 tgttttggtctactcataaaaatggttttatccttttaaaacaaaacaaaacggtccttcaattattatttttattgca 111  Q
    |||||||||||||| |  ||| ||||  || |||||||||||| | |||||||||||||||||||| |||||| |||||    
T  8529 tgttttggtctacttacgaaactggtcctacccttttaaaacacagcaaaacggtccttcaattatcatttttgttgca 8451  T

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Target: scaffold0113 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 28732 - 28615
Alignment:
Q  64 ccttttaaaacaaaacaaaacggtccttcaattattatttttattgca-ttttagtcctaccccc-attttatcctccaaaaacacacatgtatcaaatt 161  Q
    |||||||||||| |||||||||||| ||||||||| |||||| ||||| |||| ||||| ||||| ||||| |||| | ||||| |||   |  || |||    
T  28732 ccttttaaaacagaacaaaacggtcattcaattatcatttttgttgcagttttcgtccttccccccattttttccttcgaaaacgcacggatggcagatt 28633  T
Q  162 tttaactgatgtgacaaa 179  Q
    ||||||||||||| ||||    
T  28632 tttaactgatgtggcaaa 28615  T

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Target: scaffold0157 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 16565 - 16635
Alignment:
Q  77 aacaaaacggtccttcaattattatttttattgca-ttttagtccta-cccccattttatcctccaaaaac 145  Q
    |||||||||||||||||| ||| |||||| ||||| |||| ||| || |||||||||||| ||||||||||    
T  16565 aacaaaacggtccttcaagtatcatttttgttgcatttttcgtcataccccccattttattctccaaaaac 16635  T

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Target: scaffold0157; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 16983 - 16934
Alignment:
Q  66 ttttaaaacaaaacaaaacggtccttcaattattatttttattgcatttt 115  Q
    |||||||||| |||||||  ||||||||||||| |||||| |||||||||    
T  16983 ttttaaaacagaacaaaattgtccttcaattatcatttttgttgcatttt 16934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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