View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1419_low_6 (Length: 403)

Name: NF1419_low_6
Description: NF1419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1419_low_6
NF1419_low_6
[»] chr4 (3 HSPs)
chr4 (110-196)||(1159299-1159385)
chr4 (192-243)||(1159214-1159268)
chr4 (14-65)||(1159407-1159461)


Alignment Details
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 1159385 - 1159299
Alignment:
Q  110 gtatgtaatgtgattgatacgcctcttaattaaagtaaggaaactctatgtaagtaagtactatactttccttattgttacattttt 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1159385 gtatgtaatgtgattgatacgcctcttaattaaagtaaggaaactctatgtaagtaagtactatactttccttattgttacattttt 1159299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 1159268 - 1159214
Alignment:
Q  192 tttttggcaactgaaagaaacattacagctttttc---tctatatgagtattata 243  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  1159268 tttttggcaactgaaagaaacattacagctttttctgatctatatgagtattata 1159214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 1159461 - 1159407
Alignment:
Q  14 agagcaaatgtcattttcctaacca---aaaaataataatgtcattttcttggga 65  Q
    |||||||||||||||||||||||||   || ||||||||||||||||||||||||    
T  1159461 agagcaaatgtcattttcctaaccaaataataataataatgtcattttcttggga 1159407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University