View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14200_high_14 (Length: 451)

Name: NF14200_high_14
Description: NF14200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14200_high_14
NF14200_high_14
[»] chr4 (2 HSPs)
chr4 (1-387)||(35773238-35773636)
chr4 (394-451)||(35773154-35773211)
[»] chr2 (1 HSPs)
chr2 (210-259)||(33762708-33762757)
[»] chr8 (1 HSPs)
chr8 (216-254)||(20702020-20702058)
[»] chr6 (3 HSPs)
chr6 (343-387)||(13364722-13364766)
chr6 (343-387)||(7996395-7996439)
chr6 (343-387)||(8022362-8022406)
[»] chr1 (2 HSPs)
chr1 (343-408)||(40181848-40181913)
chr1 (343-387)||(12443477-12443521)
[»] chr7 (1 HSPs)
chr7 (343-375)||(23128678-23128710)
[»] chr3 (1 HSPs)
chr3 (343-387)||(8383255-8383299)


Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 35773636 - 35773238
Alignment:
Q  1 tgattcattattattgttatcaccctttgagtttatgtcacaaccattttgcattccgtgatcagatgctaagattccatcaaagaaattgtcatcattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35773636 tgattcattattattgttatcaccctttgagtttatgtcacaaccattttgcattccgtgatcagatgctaagattccatcaaagaaattgtcatcattt 35773537  T
Q  101 tcaagtccataacttgtgcttcttgaagatgaatgtttggagttttgttgcatattataggtttgatcatcatattgatccattaggagtggcctcggca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  35773536 tcaagtccataacttgtgcttcttgaagatgaatgtttggagttttgttgcatattataggtttgatcatcatattgatccattaggagtggccttggca 35773437  T
Q  201 tcgtgctactgttgcttttcttgtatattcggcacaaaacccaatcatcaagctccaaaaccaatacaatnnnnnnntgttaatatttctttaatataaa 300  Q
    |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |       ||||||| |||||||||||||||    
T  35773436 tgttgctactgttgcttttcttgtatattcggcacaaaacccaatcatcaagctccaaaaccaatatagtaaaaaaatgttaatttttctttaatataaa 35773337  T
Q  301 aac--atggtcgaatgactatccaatgaa----------acacatataattagtattacactgaattatatggttttctaaaattataagctgtgtcgg 387  Q
    |||  |||||| ||||||||| |||||||          ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35773336 aacatatggtctaatgactatgcaatgaaacacggatcgacacatataattagtattatactgaattatatggttttctaaaattataagctgtgtcgg 35773238  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 394 - 451
Target Start/End: Complemental strand, 35773211 - 35773154
Alignment:
Q  394 tatcagtgcttcatagctatgcatatgattaacaaaattatactataaagatcagacc 451  Q
    |||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  35773211 tatctgtgcttcatagctatgcatatgattaacagaattaaactataaagatcagacc 35773154  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 210 - 259
Target Start/End: Complemental strand, 33762757 - 33762708
Alignment:
Q  210 tgttgcttttcttgtatattcggcacaaaacccaatcatcaagctccaaa 259  Q
    |||||||||||||||| || ||||||||||||||||||||||||| ||||    
T  33762757 tgttgcttttcttgtagatccggcacaaaacccaatcatcaagctacaaa 33762708  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 254
Target Start/End: Complemental strand, 20702058 - 20702020
Alignment:
Q  216 ttttcttgtatattcggcacaaaacccaatcatcaagct 254  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  20702058 ttttcttgtatattcgacacaaaacccaatcatcaagct 20702020  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 13364722 - 13364766
Alignment:
Q  343 attacactgaattatatggttttctaaaattataagctgtgtcgg 387  Q
    |||||||||||||||||| |||||| ||||||||||| |||||||    
T  13364722 attacactgaattatatgattttctcaaattataagcagtgtcgg 13364766  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 7996395 - 7996439
Alignment:
Q  343 attacactgaattatatggttttctaaaattataagctgtgtcgg 387  Q
    |||||||||||||||||| |||||| ||||||| ||| |||||||    
T  7996395 attacactgaattatatgattttctcaaattattagcagtgtcgg 7996439  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 8022406 - 8022362
Alignment:
Q  343 attacactgaattatatggttttctaaaattataagctgtgtcgg 387  Q
    |||||||||||||||||| |||||| ||||||| ||| |||||||    
T  8022406 attacactgaattatatgattttctcaaattattagcagtgtcgg 8022362  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 40181913 - 40181848
Alignment:
Q  343 attacactgaattatatggttttctaaaattataagctgtgtcggtgaccctatcagtgcttcata 408  Q
    ||||||||||||||| || |||||| ||||||| ||| ||||| ||| || |||| ||||||||||    
T  40181913 attacactgaattatgtgattttctcaaattattagcagtgtctgtgtccgtatccgtgcttcata 40181848  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 12443477 - 12443521
Alignment:
Q  343 attacactgaattatatggttttctaaaattataagctgtgtcgg 387  Q
    ||||||||||||||| || |||||| ||||||| |||||||||||    
T  12443477 attacactgaattatgtgattttctcaaattattagctgtgtcgg 12443521  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 375
Target Start/End: Original strand, 23128678 - 23128710
Alignment:
Q  343 attacactgaattatatggttttctaaaattat 375  Q
    ||||||||||||||||||||||||| |||||||    
T  23128678 attacactgaattatatggttttctcaaattat 23128710  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 8383299 - 8383255
Alignment:
Q  343 attacactgaattatatggttttctaaaattataagctgtgtcgg 387  Q
    |||||||||||||||||| |||||| ||||||| ||| |||||||    
T  8383299 attacactgaattatatgattttctcaaattattagcggtgtcgg 8383255  T

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