View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14200_high_15 (Length: 451)
Name: NF14200_high_15
Description: NF14200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14200_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 53491662 - 53491223
Alignment:
| Q |
1 |
cttatgtacgattgcatttatatttttgtccgcttttttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491662 |
cttatgtacgattgcatttatatttttgtccgcttttttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaa |
53491563 |
T |
|
| Q |
101 |
agtagcatcgactcaagtcattgtgattccagtgccttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgt |
200 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491562 |
agtagcatcaactcaagtcattgtgattccagtgccttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgt |
53491463 |
T |
|
| Q |
201 |
gaagcaaaaaatacgtgctgagttagattctagagataactgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491462 |
gaagcaaaaaatacgtgctgagttagattctagagataactgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaa |
53491363 |
T |
|
| Q |
301 |
attgggccaaaggatttagtaaataagcaggttatctatgttgtcttgttgttgctcttatattcttacatatgtcattttgcttctactgtttatgttc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491362 |
attgggccaaaggatttagtaaataagcaggttatctatgttgtcttgttgttgctcttatattcttacatatgtcattttgcttctactgtttatgttc |
53491263 |
T |
|
| Q |
401 |
aatgagataccaaataaatcacttcaatttttcacaggtt |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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| T |
53491262 |
aatgagataccaaataaatcacttcaatttttcacaggtt |
53491223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 2 - 440
Target Start/End: Complemental strand, 53499254 - 53498819
Alignment:
| Q |
2 |
ttatgtacgattgcatttatatttttgtccgcttttttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaa |
101 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
53499254 |
ttatgtacgattgcatttatattttagtccgcttatttaacagattggagcaatggtgatggttcatggcgatgacaagggattggtgctacctcctaaa |
53499155 |
T |
|
| Q |
102 |
gtagcatcgactcaagtcattgtgattccagtgccttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtg |
201 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
53499154 |
gtagcatcaactcaagtcattgtgattccagtgccttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgctgtgtg |
53499055 |
T |
|
| Q |
202 |
aagcaaaaaatacgtgctgagttagattctagagataactgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaa |
301 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||| || |||||||||| |||||||||||| |||||| ||||||| ||||||||||||||||||| |
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|
| T |
53499054 |
aagca-aaaatacgtgctgagttagattctagagatagctactctcctgaaaagaagtattctgaatgggaaatgaaaggcgtccctctaaggattgaaa |
53498956 |
T |
|
| Q |
302 |
ttgggccaaaggatttagtaaataagcaggttatctatgttgtcttgttgttgctcttatattcttacatatgtcattttgcttctactgtttatgttca |
401 |
Q |
| |
|
|| |||||| |||||||| |||||| |||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||| | |||||||| |
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| T |
53498955 |
ttaggccaatggatttagaaaataaacaggttatctatgttgtcctgttgttgctcttatattct--cacatgtcattttgcttctaccctgtatgttca |
53498858 |
T |
|
| Q |
402 |
atgagataccaaataaatcacttcaatttttcacaggtt |
440 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||| |
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|
| T |
53498857 |
atgagacaccaaataaatcacttcaattttgcacaggtt |
53498819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 39 - 385
Target Start/End: Complemental strand, 16070303 - 16069958
Alignment:
| Q |
39 |
taacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattccagtgcctt |
138 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
16070303 |
taacagattggagtgatggtgatggttcatggtgatgacaagggattggtgctaccgcctaaagtagcatcaactcaagtcattgtgattccagtgcctt |
16070204 |
T |
|
| Q |
139 |
acaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagata |
238 |
Q |
| |
|
||||| | |||||| | |||||||| ||||| ||||||||||| | ||||| |||||| |||||| ||||||| ||||| ||||||||||||||||||| |
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|
| T |
16070203 |
acaaaaacgttgattgtgaaggaatcaatgacgcttgtaaagcagccgtgaagatgttgcgtgaag-aaaaaattcgtgccgagttagattctagagata |
16070105 |
T |
|
| Q |
239 |
actgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatcta |
338 |
Q |
| |
|
||| ||||| |||||| ||||||||||| |||||| |||||||||||||| ||| | |||||||||||| ||||| ||||| ||||||||||||||| | |
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| T |
16070104 |
actattctcttgaaagaaagtattctgaatgggaaatgaaaggtgtccctttaatggttgaaattgggctaaagggtttaggaaataagcaggttattaa |
16070005 |
T |
|
| Q |
339 |
tgttgtcttgttgttgctcttatattcttacatatgtcattttgctt |
385 |
Q |
| |
|
|||||| | || |||| ||| ||||||| ||||||||||| ||||| |
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|
| T |
16070004 |
tgttgttatattattgcacttgtattctttcatatgtcattatgctt |
16069958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 299
Target Start/End: Complemental strand, 53516516 - 53516478
Alignment:
| Q |
261 |
ttctgattgggaattgaaaggtgtccctctaaggattga |
299 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||| |
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|
| T |
53516516 |
ttctgaatgggaaatgaaaggtgtccctctaaggattga |
53516478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 150; Significance: 4e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 31 - 332
Target Start/End: Original strand, 45355140 - 45355440
Alignment:
| Q |
31 |
cgcttttttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattcc |
130 |
Q |
| |
|
|||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| |
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|
| T |
45355140 |
cgctttttcaacagattggggtgatggtgatggttcatggtgatgacaagggattggtgctgccacctaaagtagcatcagttcaagtcattgtgattcc |
45355239 |
T |
|
| Q |
131 |
agtgccttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattc |
230 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||| | |||| ||||||||||||||||||| ||||| | ||| |||||||||| |||| | |
|
|
| T |
45355240 |
tgtgccttacaaagatgctgatactcaaggaatctttgatgcctgtaccgcaactgtgaatatgttgttggaagc-aggaattcgtgctgagtcagatgc |
45355338 |
T |
|
| Q |
231 |
tagagataactgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcag |
330 |
Q |
| |
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||||| |||| |||||||| | |||| |||||| | |||||| |||||||||| ||||||||||||||||| ||||| |||||||||| |||||||||| |
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|
| T |
45355339 |
cagagacaactattctcctggatggaaatattctcagtgggaaatgaaaggtgttcctctaaggattgaaatcgggcccaaggatttagcaaataagcag |
45355438 |
T |
|
| Q |
331 |
gt |
332 |
Q |
| |
|
|| |
|
|
| T |
45355439 |
gt |
45355440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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