View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14200_high_19 (Length: 420)
Name: NF14200_high_19
Description: NF14200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14200_high_19 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 310 - 420
Target Start/End: Complemental strand, 15054127 - 15054017
Alignment:
| Q |
310 |
cgttgctctaaatggaaaaatctgcaattttcaacgacaattatcttctttttccgccagatctaaactgtcgtccacaaatgtcctagggttttggcca |
409 |
Q |
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| T |
15054127 |
cgttgctctaaatggaaaaatctgcaattttcaacgacaattatcttctttttccgccagatctaaactgtcgtccacaaatgtactagggttttggcca |
15054028 |
T |
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| Q |
410 |
agttctcttgt |
420 |
Q |
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| T |
15054027 |
agttctcttgt |
15054017 |
T |
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Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 124 - 247
Target Start/End: Complemental strand, 15054287 - 15054169
Alignment:
| Q |
124 |
aaacaaattctttcaattaacccttgcaatttcaaagcacttataacttgtttcaataactacctgactaaggctatgtttatgcagacttatcattctc |
223 |
Q |
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| T |
15054287 |
aaacaaattctttcaattaacccttgcaatttcaaaacacttataactt-----aataactacctgactaaggctatgtttatgcagacttatcattctc |
15054193 |
T |
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| Q |
224 |
cactattaatcaaatattaatcac |
247 |
Q |
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| T |
15054192 |
cactattaatcaaatattaatcac |
15054169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 15927337 - 15927173
Alignment:
| Q |
12 |
tcattggatttgaattgtattttactatgg-gttattttgtaaggaataaactttgtggtacttagcacgaaagccagtacaattaggtctcaatttaat |
110 |
Q |
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| T |
15927337 |
tcattggatttgagttgtattttaccattgtgttattttgtaacgaatacactttgtggtacttagcatgtaagtctctacaattaggtctcacttttat |
15927238 |
T |
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| Q |
111 |
tttattgcttgtaaaacaaattctttcaattaacccttgcaatttcaaagcacttataacttgtt |
175 |
Q |
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| T |
15927237 |
tttattgcctgtaaaacaaattctttcaattaacccttgcaatttcataacacttttaacttgtt |
15927173 |
T |
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