View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14200_high_20 (Length: 419)
Name: NF14200_high_20
Description: NF14200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14200_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 18695446 - 18695522
Alignment:
| Q |
19 |
acaccctttgggaaaattcccattggaagaccatggttgaatagaacctcgtagatggatgttgcattggaacttgt |
95 |
Q |
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| T |
18695446 |
acaccctttgggaaaattcccattggaagaccatggttgaatagaacctcgtagatggatgttgcattggaacttgt |
18695522 |
T |
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Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 332 - 414
Target Start/End: Original strand, 18695756 - 18695838
Alignment:
| Q |
332 |
gggttgacagcttgaatacagaagggattaggcaaagaatgatcaattattggtatttggtggtgactggtgattggtctgtg |
414 |
Q |
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| T |
18695756 |
gggttgacagcttgaatacagaagggattaggcaaagaatgatcaattattggtatttggtggtgaccagtgattggtgtgtg |
18695838 |
T |
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