View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14200_high_25 (Length: 366)
Name: NF14200_high_25
Description: NF14200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14200_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 351
Target Start/End: Original strand, 17754190 - 17754522
Alignment:
| Q |
19 |
aggatcctgctttcagcgactctgatatgtccgaggaagagctatgttatctaccggtatctcccattcccgatgttcctgaacaggatgacatgttgtt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
17754190 |
aggatcctgctttcagcgactctgatatgtccgaggaagagctatgttatctaccggtatctcccattcccgatgttcctgaacaggatgacaggttgtt |
17754289 |
T |
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| Q |
119 |
agatagtttttcaaatattggggacaacaataactctggatcaccattttcggaagaagtggtagcaaatggacatacgatgagtcatgcgtcaagtcca |
218 |
Q |
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|||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||| |
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| T |
17754290 |
agatagttcttcaaagattggggacagcaataactctggatcaccattttcggaagaagtggtagcaaatggacatatgatgagtcgtgcctcaagtcca |
17754389 |
T |
|
| Q |
219 |
gttgaaggtaatgtcacgccatgcaaaatatgcttgtaacagtgtattttcattcctaagattcacaatttttaaactgtactattgaataagtttgtga |
318 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17754390 |
gttgaaggtaatgtcacgcgatgcaaaatatgcttgtaacagtgtattttcattcctaagattcacaatttttaaactgtactattgaataagtttgtga |
17754489 |
T |
|
| Q |
319 |
ggccttcgtatgagtgttggtttcttccctatg |
351 |
Q |
| |
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||||||||||||||||| ||||||||||||||| |
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| T |
17754490 |
ggccttcgtatgagtgtaggtttcttccctatg |
17754522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 351
Target Start/End: Original strand, 17763177 - 17763509
Alignment:
| Q |
19 |
aggatcctgctttcagcgactctgatatgtccgaggaagagctatgttatctaccggtatctcccattcccgatgttcctgaacaggatgacatgttgtt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
17763177 |
aggatcctgctttcagcgactctgatatgtccgaggaagagctatgttatctaccggtatctcccattcccgatgttcctgaacaggatgacaggttgtt |
17763276 |
T |
|
| Q |
119 |
agatagtttttcaaatattggggacaacaataactctggatcaccattttcggaagaagtggtagcaaatggacatacgatgagtcatgcgtcaagtcca |
218 |
Q |
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|||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||| |
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| T |
17763277 |
agatagttcttcaaagattggggacagcaataactctggatcaccattttcggaagaagtggtagcaaatggacatatgatgagtcgtgcctcaagtcca |
17763376 |
T |
|
| Q |
219 |
gttgaaggtaatgtcacgccatgcaaaatatgcttgtaacagtgtattttcattcctaagattcacaatttttaaactgtactattgaataagtttgtga |
318 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17763377 |
gttgaaggtaatgtcacgcgatgcaaaatatgcttgtaacagtgtattttcattcctaagattcacaatttttaaactgtactattgaataagtttgtga |
17763476 |
T |
|
| Q |
319 |
ggccttcgtatgagtgttggtttcttccctatg |
351 |
Q |
| |
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||||||||||||||||| ||||||||||||||| |
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| T |
17763477 |
ggccttcgtatgagtgtaggtttcttccctatg |
17763509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 19 - 353
Target Start/End: Original strand, 17740206 - 17740538
Alignment:
| Q |
19 |
aggatcctgctttcagcgactctgatatgtccgaggaagagctatgttatctaccggtatctcccattcccgatgttcctgaacaggatgacatgttgtt |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||| | | || |
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| T |
17740206 |
aggatcctaatttcagcgactctgatatgtctgaggaagagctacgttatctaccagtatctcccattcccgatgttcctgaacaggaagacaggctttt |
17740305 |
T |
|
| Q |
119 |
agatagtttttcaaatattggggacaacaataactctggatcaccattttcggaagaagtggtagcaaatggacatacgatgagtcatgcgtcaagtcca |
218 |
Q |
| |
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|||||||| |||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||| ||||||||| |
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| T |
17740306 |
agatagttcttcaaagattggggacagcaataactctggatcaccattttcagaagaagtggtagcaaatggacacatgatgagtcatgcctcaagtcca |
17740405 |
T |
|
| Q |
219 |
gttgaaggtaatgtcacgccatgcaaaatatgcttgtaacagtgtattttcattcctaagattcacaatttttaaactgtactattgaataagtttgtga |
318 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| | |||||||||||| ||||| || |||| ||| || || ||| ||||| | ||||| | |
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| T |
17740406 |
cttgaaggtaatgtcacaccatgcaaaatatgcttgtaacggagtattttcattcttaagaatcccaatgttttaattgaactgttgaaacactttgtca |
17740505 |
T |
|
| Q |
319 |
ggccttcgtatgagtgttggtttcttccctatgct |
353 |
Q |
| |
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|||||| ||||||| | ||||||||||| ||||| |
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| T |
17740506 |
ggcctt--tatgagtttaggtttcttccccatgct |
17740538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 19 - 324
Target Start/End: Original strand, 15736141 - 15736446
Alignment:
| Q |
19 |
aggatcctgctttcagcgactctgatatgtccgaggaagagctatgttatctaccggtatctcccattcccgatgttcctgaacaggatgacatgttgtt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||| | |||||||||||||||||| |||| ||| || |
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| T |
15736141 |
aggatcctgctttcagcgactctgatatgtccgaggaagagctatgttatctgccagcatctccctgccgcgatgttcctgaacaggaagacaggttttt |
15736240 |
T |
|
| Q |
119 |
agatagtttttcaaatattggggacaacaataactctggatcaccattttcggaagaagtggtagcaaatggacatacgatgagtcatgcgtcaagtcca |
218 |
Q |
| |
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||| |||| |||||| |||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
15736241 |
agaaagttcttcaaagattggggacagcaataactccggatcaccattttccgaagaagtggtagcaaatggacatatgatgagtcatgcctcaagtcca |
15736340 |
T |
|
| Q |
219 |
gttgaaggtaatgtcacgccatgcaaaatatgcttgtaacagtgtattttcattcctaagattcacaatttttaaactgtactattgaataagtttgtga |
318 |
Q |
| |
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|||||||||||||||| ||||| |||||||||||||||||| ||||||||||| ||||| || ||||||| || || ||| ||||| | ||||||| |
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| T |
15736341 |
gttgaaggtaatgtcatgccattcaaaatatgcttgtaacatattattttcattcttaagaatccgaatttttcaattgaactgttgaaccactttgtga |
15736440 |
T |
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| Q |
319 |
ggcctt |
324 |
Q |
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|||||| |
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| T |
15736441 |
ggcctt |
15736446 |
T |
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