View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14200_high_30 (Length: 322)

Name: NF14200_high_30
Description: NF14200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14200_high_30
NF14200_high_30
[»] chr7 (10 HSPs)
chr7 (60-315)||(31076897-31077153)
chr7 (60-243)||(42417421-42417605)
chr7 (59-119)||(42418225-42418285)
chr7 (60-119)||(41406987-41407046)
chr7 (274-315)||(42417577-42417618)
chr7 (60-110)||(43103818-43103866)
chr7 (60-109)||(43104708-43104755)
chr7 (60-145)||(26782421-26782505)
chr7 (74-111)||(31077763-31077800)
chr7 (89-145)||(26786535-26786590)
[»] chr3 (6 HSPs)
chr3 (60-243)||(33565343-33565527)
chr3 (60-171)||(33336217-33336328)
chr3 (72-143)||(20518984-20519054)
chr3 (274-315)||(33565499-33565540)
chr3 (80-119)||(46889330-46889369)
chr3 (80-136)||(48058946-48059001)
[»] chr4 (8 HSPs)
chr4 (60-243)||(50185942-50186126)
chr4 (60-119)||(50185263-50185322)
chr4 (60-119)||(26341379-26341438)
chr4 (58-119)||(43460578-43460639)
chr4 (282-315)||(50185929-50185962)
chr4 (59-118)||(12920329-12920388)
chr4 (89-165)||(8139719-8139792)
chr4 (60-140)||(49574058-49574137)
[»] chr5 (16 HSPs)
chr5 (60-243)||(33573905-33574086)
chr5 (60-140)||(33574113-33574193)
chr5 (60-119)||(4084774-4084831)
chr5 (60-119)||(10951268-10951327)
chr5 (60-119)||(33573238-33573297)
chr5 (60-119)||(38486958-38487017)
chr5 (274-315)||(33573892-33573933)
chr5 (60-119)||(6051753-6051812)
chr5 (60-110)||(27365647-27365695)
chr5 (60-119)||(6052606-6052665)
chr5 (60-118)||(4909021-4909079)
chr5 (98-164)||(7726197-7726262)
chr5 (60-110)||(27364578-27364628)
chr5 (99-144)||(19119657-19119702)
chr5 (60-144)||(24872591-24872671)
chr5 (89-145)||(31021694-31021749)
[»] chr1 (6 HSPs)
chr1 (78-119)||(28764409-28764450)
chr1 (60-110)||(10920147-10920195)
chr1 (113-163)||(15418265-15418315)
chr1 (60-110)||(23818283-23818331)
chr1 (113-151)||(1469578-1469616)
chr1 (97-146)||(12644854-12644903)
[»] chr6 (5 HSPs)
chr6 (60-119)||(24063850-24063909)
chr6 (97-162)||(18969941-18970006)
chr6 (60-145)||(33485135-33485219)
chr6 (89-145)||(15654810-15654865)
chr6 (89-145)||(33489247-33489302)
[»] scaffold0159 (1 HSPs)
scaffold0159 (82-163)||(28162-28241)
[»] chr8 (3 HSPs)
chr8 (63-119)||(45107991-45108047)
chr8 (60-119)||(5780709-5780768)
chr8 (60-140)||(36228493-36228570)
[»] chr2 (1 HSPs)
chr2 (60-118)||(33739413-33739471)
[»] scaffold0019 (2 HSPs)
scaffold0019 (89-145)||(74648-74703)
scaffold0019 (89-145)||(102837-102892)


Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 60 - 315
Target Start/End: Original strand, 31076897 - 31077153
Alignment:
Q  60 atatatatatagaggggatgtatcaagtaagaggacattttataatgagagggtgagagggtgaaataatgacccttagattaaattagatggctgtgat 159  Q
    ||||||||||| ||||| |||||||||| ||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  31076897 atatatatatataggggttgtatcaagtgagatgacattttataatgagagggtgagaggataaaataatgacccttagattaaattagatggctgtgat 31076996  T
Q  160 taaatgttacttctatgactcgtatgatactctc-tttccctatccctagttgaaactgaaacgttggcttccttctccctgtattcatcgtgaccctct 258  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  31076997 taaatgttacttctatgactcgtatgatactctcttttccctatccccagctgaaactgaaacgtttgcttccttctccttgtattcatcgtgaccctct 31077096  T
Q  259 gctctcaataggtttctgaaacattggcttccttctccctgtatccatggcttctct 315  Q
     |||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  31077097 cctctcaataggtttctgaaacatcagcttccttctccctgtatccatggcttctct 31077153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 60 - 243
Target Start/End: Original strand, 42417421 - 42417605
Alignment:
Q  60 atatatatatagaggggatgtatcaagtaagaggacattttataatgagagggtgagagggtgaaataatgacccttagattaaattagatggctgtgat 159  Q
    ||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42417421 atatatatatataggggatgtatcaagtgagaggacattttagaatgagagggtgagaggatgaaataatgacccttagattaaattagatggctgtgat 42417520  T
Q  160 taaatgttacttctatgactcgtatgatactctc-tttccctatccctagttgaaactgaaacgttggcttccttctccctgtat 243  Q
    ||||||| |||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  42417521 taaatgtcacttctatgactcgtatgatactctcttttccttatccctagctgaaactgaaacgttggcttccttctccctgtat 42417605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 42418285 - 42418225
Alignment:
Q  59 catatatatatagaggggatgtatcaagtaagaggacattttataatgagagggtgagagg 119  Q
    |||||||||||| |||||||||||||| | ||||||||||||| |||||||||||||||||    
T  42418285 catatatatatataggggatgtatcaaatgagaggacattttaaaatgagagggtgagagg 42418225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 41407046 - 41406987
Alignment:
Q  60 atatatatatagaggggatgtatcaagtaagaggacattttataatgagagggtgagagg 119  Q
    ||||||||||| | |||||||||||| | ||| |||||||||||||||||||||||||||    
T  41407046 atatatatataaaagggatgtatcaaatgagatgacattttataatgagagggtgagagg 41406987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 42417577 - 42417618
Alignment:
Q  274 ctgaaacattggcttccttctccctgtatccatggcttctct 315  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  42417577 ctgaaacgttggcttccttctccctgtatccatggcttctct 42417618  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 43103818 - 43103866
Alignment:
Q  60 atatatatatagaggggatgtatcaagtaagaggacattttataatgagag 110  Q
    ||||||||||||| ||  |||||||||| ||||||||||||||||||||||    
T  43103818 atatatatatagaagg--tgtatcaagtgagaggacattttataatgagag 43103866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 109
Target Start/End: Complemental strand, 43104755 - 43104708
Alignment:
Q  60 atatatatatagaggggatgtatcaagtaagaggacattttataatgaga 109  Q
    ||||||||||||||||  |||||||||| ||| |||||||||||||||||    
T  43104755 atatatatatagaggg--tgtatcaagtgagatgacattttataatgaga 43104708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 145
Target Start/End: Original strand, 26782421 - 26782505
Alignment:
Q  60 atatatatatagaggggatgtatcaagtaagaggacattttataatgagagggtgagagggtgaaataatgacccttagattaaat 145  Q
    ||||||||||| |  |||||  |||| | |||||||  |||||||||||||  |||||||||||||||||| ||||| ||||||||    
T  26782421 atatatatatatataggatgactcaaatgagaggaccatttataatgagaga-tgagagggtgaaataatggcccttggattaaat 26782505  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 31077800 - 31077763
Alignment:
Q  74 gggatgtatcaagtaagaggacattttataatgagagg 111  Q
    |||||||||||| | |||||||||||||||||||||||    
T  31077800 gggatgtatcaaatgagaggacattttataatgagagg 31077763  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 26786590 - 26786535
Alignment:
Q  89 agaggacattttataatgagagggtgagagggtgaaataatgacccttagattaaat 145  Q
    |||||||  |||||||||||||  |||||||||||||||||| ||||| ||||||||    
T  26786590 agaggactatttataatgagaga-tgagagggtgaaataatggcccttcgattaaat 26786535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 60 - 243
Target Start/End: Original strand, 33565343 - 33565527
Alignment:
Q  60 atatatatatagaggggatgtatcaagtaagaggacattttataatgagagggtgagagggtgaaataatgacccttagattaaattagatggctgtgat 159  Q
    ||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33565343 atatatatatataggggatgtatcaagtgagaggacattttagaatgagagggtgagaggatgaaataatgacccttagattaaattagatggctgtgat 33565442  T
Q  160 taaatgttacttctatgactcgtatgatactctc-tttccctatccctagttgaaactgaaacgttggcttccttctccctgtat 243  Q
    ||||||| |||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  33565443 taaatgtcacttctatgactcgtatgatactctcttttccttatccctagctgaaactgaaacgttggcttccttctccctgtat 33565527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 60 - 171
Target Start/End: Original strand, 33336217 - 33336328
Alignment:
Q  60 atatatatatagaggggatgtatcaagtaagaggacattttataatgagagggtgagagggtgaaataatgacccttagattaaattagatggctgtgat 159  Q
    ||||||||||| ||||||||| |||| | ||||||||||||||||| |||||||||| ||  || ||||| |||||||||||||||||||||| ||||||    
T  33336217 atatatatatataggggatgtttcaaatgagaggacattttataataagagggtgagtggaagagataataacccttagattaaattagatggttgtgat 33336316  T
Q  160 taaatgttactt 171  Q
    ||||||||||||    
T  33336317 taaatgttactt 33336328  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 143
Target Start/End: Complemental strand, 20519054 - 20518984
Alignment:
Q  72 aggggatgtatcaagtaagaggacattttataatgagagggtgagagggtgaaataatgacccttagattaa 143  Q
    ||||||||||| || |||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||    
T  20519054 aggggatgtattaaataagaggagattttataatgagagg-tgagagggtgaaataatggcccttagattaa 20518984  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 33565499 - 33565540
Alignment:
Q  274 ctgaaacattggcttccttctccctgtatccatggcttctct 315  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  33565499 ctgaaacgttggcttccttctccctgtatccatggcttctct 33565540  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 46889330 - 46889369
Alignment:
Q  80 tatcaagtaagaggacattttataatgagagggtgagagg 119  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  46889330 tatcaaatgagaggacattttataatgagagggtgagagg 46889369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 48059001 - 48058946
Alignment:
Q  80 tatcaagtaagaggacattttataatgagagggtgagagggtgaaataatgaccctt 136  Q
    ||||||||||||||| |||||| ||||||||||||||||| | |||| || ||||||    
T  48059001 tatcaagtaagagga-attttaaaatgagagggtgagaggattaaatcataaccctt 48058946  T

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Target: chr4 (Bit Score: 141; Significance: 6e-74; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 60 - 243
Target Start/End: Complemental strand, 50186126 - 50185942
Alignment:
Q  60 atatatatatagaggggatgtatcaagtaagaggacattttataatgagagggtgagagggtgaaataatgacccttagattaaattagatggctgtgat 159  Q
    ||||||||||| ||| |||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  50186126 atatatatatataggtgatgtatcaagtgagaggacattttagaatgagagggtgagaggatgaaataatgacccttagattaaattagatggctgtgat 50186027  T
Q  160 taaatgttacttctatgactcgtatgatactctc-tttccctatccctagttgaaactgaaacgttggcttccttctccctgtat 243  Q
    ||||||| |||||||||||||||||||||||||| ||||| ||||||||| ||||||||||| ||||||||||||||||||||||    
T  50186026 taaatgtcacttctatgactcgtatgatactctcttttccttatccctagctgaaactgaaatgttggcttccttctccctgtat 50185942  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 50185263 - 50185322
Alignment:
Q  60 atatatatatagaggggatgtatcaagtaagaggacattttataatgagagggtgagagg 119  Q
    ||||||||||| |||||||||||||| | ||||||||||||| |||||||||||||||||    
T  50185263 atatatatatataggggatgtatcaaatgagaggacattttaaaatgagagggtgagagg 50185322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 26341438 - 26341379
Alignment:
Q  60 atatatatatagaggggatgtatcaagtaagaggacattttataatgagagggtgagagg 119  Q
    ||||||||||| |||||||||||||| | ||||||  | |||||||||||||||||||||    
T  26341438 atatatatatataggggatgtatcaaatgagaggaagtgttataatgagagggtgagagg 26341379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 43460578 - 43460639
Alignment:
Q  58 acatatatatatagaggggatgtatcaagtaagaggacattttataatgagagggtgagagg 119  Q
    ||||||||||||| | |||||||||||| | ||||||  | |||||||||||||||||||||    
T  43460578 acatatatatatatatgggatgtatcaaatgagaggaagtgttataatgagagggtgagagg 43460639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 315
Target Start/End: Complemental strand, 50185962 - 50185929
Alignment:
Q  282 ttggcttccttctccctgtatccatggcttctct 315  Q
    ||||||||||||||||||||||||||||||||||    
T  50185962 ttggcttccttctccctgtatccatggcttctct 50185929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 12920329 - 12920388
Alignment:
Q  59 catatatatatagaggggatgtatcaagtaagaggacattttataatgagagggtgagag 118  Q
    |||||||||||| | |||||||||||| | |||| || | ||||||||||||||||||||    
T  12920329 catatatatatatatgggatgtatcaaatgagagaacttcttataatgagagggtgagag 12920388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 165
Target Start/End: Original strand, 8139719 - 8139792
Alignment:
Q  89 agaggacattttataatgagagggtgagagggtgaaataatgacccttagattaaattagatggctgtgattaaatg 165  Q
    |||||| |||||||||||||| | ||||||||| |||||| ||||||| |||  |||||||||| || |||||||||    
T  8139719 agaggatattttataatgaga-gatgagagggttaaataaagacccttggat--aattagatggttgggattaaatg 8139792  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 49574058 - 49574137
Alignment:
Q  60 atatatatatagaggggatgtatcaagtaagaggacattttataatgagagggtgagagggtgaaataatgacccttagat 140  Q
    ||||||||||| |||| ||||||||||| ||||||  | ||| ||||||| ||||||||||| |||| |  ||||||||||    
T  49574058 atatatatatatagggaatgtatcaagtgagaggagttcttaaaatgaga-ggtgagagggttaaatcacaacccttagat 49574137  T

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Target: chr5 (Bit Score: 126; Significance: 6e-65; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 60 - 243
Target Start/End: Complemental strand, 33574086 - 33573905
Alignment:
Q  60 atatatatatagaggggatgtatcaagtaagaggacattttataatgagagggtgagagggtgaaataatgacccttagattaaattagatggctgtgat 159  Q
    ||||||||||| |||| ||  ||||||| ||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33574086 atatatatatatagggcat--atcaagtgagaggac-ttttaaaatgagagggtgagaggatgaaataatgacccttagattaaattagatggctgtgat 33573990  T
Q  160 taaatgttacttctatgactcgtatgatactctc-tttccctatccctagttgaaactgaaacgttggcttccttctccctgtat 243  Q
    ||||||| |||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  33573989 taaatgtcacttctatgactcgtatgatactctcttttccttatccctagctgaaactgaaacgttggcttccttctccctgtat 33573905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 33574113 - 33574193
Alignment:
Q  60 atatatatatagaggggatgtatcaagtaagaggacattttataatgagagggtgagagggtgaaataatgacccttagat 140  Q
    ||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||| | |||| || ||| ||||||    
T  33574113 atatatatatataggggatgtatcaagtgagaggacattttagaatgagagggtgagaggattaaattataacctttagat 33574193  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 4084831 - 4084774
Alignment:
Q  60 atatatatatagaggggatgtatcaagtaagaggacattttataatgagagggtgagagg 119  Q
    ||||||||||| ||||  |||||||||| |||||||||||||||||||||||||||||||    
T  4084831 atatatatatataggg--tgtatcaagtgagaggacattttataatgagagggtgagagg 4084774  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 10951268 - 10951327
Alignment:
Q  60 atatatatatagaggggatgtatcaagtaagaggacattttataatgagagggtgagagg 119  Q
    ||||||||||| || || |||||||||| ||||| |||||||||||||||||||||||||    
T  10951268 atatatatatatagagggtgtatcaagtgagagggcattttataatgagagggtgagagg 10951327  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 33573238 - 33573297
Alignment:
Q  60 atatatatatagaggggatgtatcaagtaagaggacattttataatgagagggtgagagg 119  Q
    ||||||||||| |||||||||||||| | ||||||||||||| ||||||||| |||||||    
T  33573238 atatatatatataggggatgtatcaaatgagaggacattttaaaatgagaggctgagagg 33573297  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 38486958 - 38487017
Alignment:
Q  60 atatatatatagaggggatgtatcaagtaagaggacattttataatgagagggtgagagg 119  Q
    ||||||||||| |||||||||||||||| |||| ||  ||||||||||||||||||||||    
T  38486958 atatatatatataggggatgtatcaagtgagagcactatttataatgagagggtgagagg 38487017  T

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Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 315
Target Start/End: Complemental strand, 33573933 - 33573892
Alignment:
Q  274 ctgaaacattggcttccttctccctgtatccatggcttctct 315  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  33573933 ctgaaacgttggcttccttctccctgtatccatggcttctct 33573892  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 6051753 - 6051812
Alignment:
Q  60 atatatatatagaggggatgtatcaagtaagaggacattttataatgagagggtgagagg 119  Q
    ||||||||||| |||||||||||||| | ||||||  | |||||||||||||||||||||    
T  6051753 atatatatatataggggatgtatcaaatgagaggaagtgttataatgagagggtgagagg 6051812  T

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Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 27365695 - 27365647
Alignment:
Q  60 atatatatatagaggggatgtatcaagtaagaggacattttataatgagag 110  Q
    ||||||||||||||||  |||||||||| ||||||||||||||||||||||    
T  27365695 atatatatatagaggg--tgtatcaagtgagaggacattttataatgagag 27365647  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 6052665 - 6052606
Alignment:
Q  60 atatatatatagaggggatgtatcaagtaagaggacattttataatgagagggtgagagg 119  Q
    ||||||||||| |||||||||||||| | ||||||  | |||||||||||| ||||||||    
T  6052665 atatatatatataggggatgtatcaaatgagaggaagtgttataatgagagagtgagagg 6052606  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 4909079 - 4909021
Alignment:
Q  60 atatatatatagaggggatgtatcaagtaagaggacattttataatgagagggtgagag 118  Q
    ||||||||||||||||| |||||||| | |||| | || |||| |||||||||||||||    
T  4909079 atatatatatagagggggtgtatcaaatgagagcatatcttattatgagagggtgagag 4909021  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 164
Target Start/End: Complemental strand, 7726262 - 7726197
Alignment:
Q  98 tttataatgagagggtgagagggtgaaataatgacccttagattaaattagatggctgtgattaaat 164  Q
    |||||||||||||  |||| ||||||||||||||||||| |||||||| | |||| ||| |||||||    
T  7726262 tttataatgagaga-tgagtgggtgaaataatgacccttggattaaatcaaatggttgtaattaaat 7726197  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 27364578 - 27364628
Alignment:
Q  60 atatatatatagaggggatgtatcaagtaagaggacattttataatgagag 110  Q
    ||||||||||| || || |||||||||| |||| |||||||||||||||||    
T  27364578 atatatatatatagagggtgtatcaagtgagagtacattttataatgagag 27364628  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 19119702 - 19119657
Alignment:
Q  99 ttataatgagagggtgagagggtgaaataatgacccttagattaaa 144  Q
    ||||||||||||| |||||||   ||||||||||||||||||||||    
T  19119702 ttataatgagaggatgagaggaataaataatgacccttagattaaa 19119657  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 144
Target Start/End: Complemental strand, 24872671 - 24872591
Alignment:
Q  60 atatatatatagaggggatgtatcaagtaagaggacattttataatgagagggtgagagggtgaaataatgacccttagattaaa 144  Q
    ||||||||||||||||  |||||||| | |||||||| |||||||||||| ||||||||  | |||| || ||||||||||||||    
T  24872671 atatatatatagaggg--tgtatcaaatgagaggaca-tttataatgaga-ggtgagagcatcaaatgataacccttagattaaa 24872591  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 31021749 - 31021694
Alignment:
Q  89 agaggacattttataatgagagggtgagagggtgaaataatgacccttagattaaat 145  Q
    |||||||  |||||||||||||  |||||||||||||||||| ||||| ||||||||    
T  31021749 agaggaccatttataatgagaga-tgagagggtgaaataatggcccttggattaaat 31021694  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 28764450 - 28764409
Alignment:
Q  78 tgtatcaagtaagaggacattttataatgagagggtgagagg 119  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  28764450 tgtatcaagtgagaggacattttataatgagagggtgagagg 28764409  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 10920195 - 10920147
Alignment:
Q  60 atatatatatagaggggatgtatcaagtaagaggacattttataatgagag 110  Q
    ||||||||||||||||  |||||||||| ||||||||||||||||||||||    
T  10920195 atatatatatagaggg--tgtatcaagtgagaggacattttataatgagag 10920147  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 163
Target Start/End: Original strand, 15418265 - 15418315
Alignment:
Q  113 tgagagggtgaaataatgacccttagattaaattagatggctgtgattaaa 163  Q
    ||||||||||||||||||||| ||| ||||| |||||| ||||||||||||    
T  15418265 tgagagggtgaaataatgaccattaaattaacttagatcgctgtgattaaa 15418315  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 23818331 - 23818283
Alignment:
Q  60 atatatatatagaggggatgtatcaagtaagaggacattttataatgagag 110  Q
    ||||||||||||||||  |||||||||| |||||| |||||||||||||||    
T  23818331 atatatatatagaggg--tgtatcaagtgagaggatattttataatgagag 23818283  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 151
Target Start/End: Complemental strand, 1469616 - 1469578
Alignment:
Q  113 tgagagggtgaaataatgacccttagattaaattagatg 151  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  1469616 tgagagggtgaaataatgacccttggattaaatgagatg 1469578  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 12644903 - 12644854
Alignment:
Q  97 ttttataatgagagggtgagagggtgaaataatgacccttagattaaatt 146  Q
    ||||| ||||||||||||||||| | ||||||  ||||||||||||||||    
T  12644903 ttttaaaatgagagggtgagaggattaaataagaacccttagattaaatt 12644854  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 24063850 - 24063909
Alignment:
Q  60 atatatatatagaggggatgtatcaagtaagaggacattttataatgagagggtgagagg 119  Q
    ||||||||||| |||||||||||||| | ||||||  | |||||||||||||||||||||    
T  24063850 atatatatatataggggatgtatcaaatgagaggaagtgttataatgagagggtgagagg 24063909  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 162
Target Start/End: Original strand, 18969941 - 18970006
Alignment:
Q  97 ttttataatgagagggtgagagggtgaaataatgacccttagattaaattagatggctgtgattaa 162  Q
    ||||| ||||||||| ||||||| | ||||||  ||||||||||||||||  |||| |||||||||    
T  18969941 ttttaaaatgagaggatgagaggattaaataagaacccttagattaaatttaatggttgtgattaa 18970006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 145
Target Start/End: Original strand, 33485135 - 33485219
Alignment:
Q  60 atatatatatagaggggatgtatcaagtaagaggacattttataatgagagggtgagagggtgaaataatgacccttagattaaat 145  Q
    ||||||||||| || |||||  |||  | |||||||  |||||||||||||  |||||||||||||||||| ||||| ||||||||    
T  33485135 atatatatatatagaggatgactcagatgagaggaccatttataatgagaga-tgagagggtgaaataatggcccttggattaaat 33485219  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 15654810 - 15654865
Alignment:
Q  89 agaggacattttataatgagagggtgagagggtgaaataatgacccttagattaaat 145  Q
    |||||||  |||||||||||||  |||||||||||||||||| ||||| ||||||||    
T  15654810 agaggaccatttataatgagaga-tgagagggtgaaataatggcccttggattaaat 15654865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 33489302 - 33489247
Alignment:
Q  89 agaggacattttataatgagagggtgagagggtgaaataatgacccttagattaaat 145  Q
    |||||||  |||||||||||||  |||||||||||||||||| ||||| ||||||||    
T  33489302 agaggaccatttataatgagaga-tgagagggtgaaataatggcccttggattaaat 33489247  T

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Target: scaffold0159 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 28162 - 28241
Alignment:
Q  82 tcaagtaagaggacattttataatgagagggtgagagggtgaaataatgacccttagattaaattagatggctgtgattaaa 163  Q
    |||| ||||||||| ||||| ||||||||||||||||| ||||| | || || ||||||| | |||||||||||||||||||    
T  28162 tcaaataagaggacttttta-aatgagagggtgagaggatgaaacagtggccattagatt-agttagatggctgtgattaaa 28241  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 45108047 - 45107991
Alignment:
Q  63 tatatatagaggggatgtatcaagtaagaggacattttataatgagagggtgagagg 119  Q
    |||||||| | |||||||||||||| |||| ||  ||||||||||||||||||||||    
T  45108047 tatatatatatgggatgtatcaagtgagagtactatttataatgagagggtgagagg 45107991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 5780768 - 5780709
Alignment:
Q  60 atatatatatagaggggatgtatcaagtaagaggacattttataatgagagggtgagagg 119  Q
    ||||||||||| |||||||||||||| | ||||||||| ||||  ||||||| |||||||    
T  5780768 atatatatatataggggatgtatcaaatgagaggacatgttattgtgagaggatgagagg 5780709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 36228493 - 36228570
Alignment:
Q  60 atatatatatagaggggatgtatcaagtaagaggacattttataatgagagggtgagagggtgaaataatgacccttagat 140  Q
    ||||||||||| |||| ||  ||||||||||||||| ||||| ||||||| | |||||||||||||| |  ||||||||||    
T  36228493 atatatatatatagggcat--atcaagtaagaggaccttttaaaatgaga-gatgagagggtgaaatcacaacccttagat 36228570  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 33739471 - 33739413
Alignment:
Q  60 atatatatatagaggggatgtatcaagtaagaggacattttataatgagagggtgagag 118  Q
    ||||||||||| |||  ||||||||| | ||||||| | ||||||||||||||||||||    
T  33739471 atatatatatataggaaatgtatcaaatgagaggacttcttataatgagagggtgagag 33739413  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 74648 - 74703
Alignment:
Q  89 agaggacattttataatgagagggtgagagggtgaaataatgacccttagattaaat 145  Q
    |||||||  |||||||||||||  |||||||||||||||||| ||||| ||||||||    
T  74648 agaggaccatttataatgagaga-tgagagggtgaaataatggcccttggattaaat 74703  T

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Target: scaffold0019; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 102892 - 102837
Alignment:
Q  89 agaggacattttataatgagagggtgagagggtgaaataatgacccttagattaaat 145  Q
    |||||||  |||||||||||||  |||||||||||||||||| ||||| ||||||||    
T  102892 agaggaccatttataatgagaga-tgagagggtgaaataatggcccttggattaaat 102837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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