View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14200_high_34 (Length: 305)
Name: NF14200_high_34
Description: NF14200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14200_high_34 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 10 - 305
Target Start/End: Complemental strand, 4106090 - 4105795
Alignment:
| Q |
10 |
catcatcattaaaataaagttggaaccttccacttgtgaaattggtctctgagaatcttgaagttaaggtggcacctaactcaagtgattgattaggcaa |
109 |
Q |
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| T |
4106090 |
catcatcattaaaataaagttggaaccttccacttgtgaaattggtctctgagaatcttgaagttaaggtggcacctaactcaagtgattgattaggcaa |
4105991 |
T |
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| Q |
110 |
aagggtatcagtaggaaacttaaaactttcccaaacaatagcagatttgttgtttacaagaacaaagtttccattatcaagcatggttccataggaaaca |
209 |
Q |
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| T |
4105990 |
aagggtatcagtaggaaacttaaaactttcccaaacaatagcagatttgttgtttacaagaacaaagtttccattatcaagcatggttccataggaaaca |
4105891 |
T |
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| Q |
210 |
atatcgtttggttgtgctgtccaaatggattcattttgtggatttgtcaacgtgagtccacctgatgttagctgaacctgtgatcctgttggtgct |
305 |
Q |
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| T |
4105890 |
atatcgtttggttgtgctgtccaaatggattcattttgtggatttgtcaacgtgagtccacctgatgttagctgaacctgtgatcctgttggtgct |
4105795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 10 - 305
Target Start/End: Complemental strand, 4129280 - 4128985
Alignment:
| Q |
10 |
catcatcattaaaataaagttggaaccttccacttgtgaaattggtctctgagaatcttgaagttaaggtggcacctaactcaagtgattgattaggcaa |
109 |
Q |
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|||||||| |||||||||||||||||| ||||||||| | ||||||||||| ||||| ||||||| | | ||||||| ||||| |||||||||||||| |
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| T |
4129280 |
catcatcacgaaaataaagttggaacctcccacttgtgtagttggtctctgaaaatctagaagttatgtttccacctaattcaagagattgattaggcaa |
4129181 |
T |
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| Q |
110 |
aagggtatcagtaggaaacttaaaactttcccaaacaatagcagatttgttgtttacaagaacaaagtttccattatcaagcatggttccataggaaaca |
209 |
Q |
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| T |
4129180 |
aagggtgtcggtgggaaacttgaaactttcccaaacaatagaagaattcttattaacaagaacaaagtttccagtatcatgcatgattccataggaaaca |
4129081 |
T |
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| Q |
210 |
atatcgtttggttgtgctgtccaaatggattcattttgtggatttgtcaacgtgagtccacctgatgttagctgaacctgtgatcctgttggtgct |
305 |
Q |
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| T |
4129080 |
gctgtgtttggttgtgctgtccaaatggattcaccttgttgagttgtcaacgtgagtcctcctgatgttagctgaacttgtgatcctgtcggtgct |
4128985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 4100634 - 4100602
Alignment:
| Q |
5 |
atggacatcatcattaaaataaagttggaacct |
37 |
Q |
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| T |
4100634 |
atggtcatcatcattaaaataaagttggaacct |
4100602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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