View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14200_high_40 (Length: 262)
Name: NF14200_high_40
Description: NF14200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14200_high_40 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 10713373 - 10713620
Alignment:
| Q |
1 |
gctcttgtgtccatgtaccactactcatcatgaggagttatagacagagtgtgcattctcttggtgtgtatgatggttgtgctgatgcgacatgtgcttc |
100 |
Q |
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| T |
10713373 |
gctcttgtgtccatgtaccactactcatcatgaggagttatagacagagtgtgcattctgttggtgtgtatgatggttgtgctgatgcgacatgtgcttc |
10713472 |
T |
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| Q |
101 |
atgtggtctatgcccaagaatgcctggttgacggttgagagcggctggttgctgccaatttccagttgtagggtatggacatggaagagtgacccatgga |
200 |
Q |
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| T |
10713473 |
atgtggtctatgcccaagaatgcctggttgacggttgagagcggctggttgctgccaatttccagttgtagggtatggacatggaagagtgacccatgga |
10713572 |
T |
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| Q |
201 |
ggatatgaccaaggtggatatgctcatggctgttgtgagggttgattc |
248 |
Q |
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| T |
10713573 |
ggatatgcccaaggtggatatgctcatggctgttgtgagggttgattc |
10713620 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 164
Target Start/End: Complemental strand, 55155727 - 55155624
Alignment:
| Q |
61 |
ttggtgtgtatgatggttgtgctgatgcgacatgtgcttcatgtggtctatgcccaagaatgcctggttgacggttgagagcggctggttgctgccaatt |
160 |
Q |
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| T |
55155727 |
ttggtgtgtatgacggttgtgttgaagccatgtgtgcctgttgtggtctctgtctaagaatgcctggttggcggtttggagcgactgattgctgccaatt |
55155628 |
T |
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| Q |
161 |
tcca |
164 |
Q |
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|||| |
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| T |
55155627 |
tcca |
55155624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 29641359 - 29641307
Alignment:
| Q |
1 |
gctcttgtgtccatgtaccactactcatcatgaggagttatagacagagtgtg |
53 |
Q |
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|||| ||||||||||||||||| |||||| ||||||| ||||| |||||||| |
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| T |
29641359 |
gctcatgtgtccatgtaccactgttcatcaagaggagtcatagatagagtgtg |
29641307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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