View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14200_low_11 (Length: 467)
Name: NF14200_low_11
Description: NF14200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14200_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 16 - 456
Target Start/End: Original strand, 10315507 - 10315956
Alignment:
| Q |
16 |
tgccaatggcttctcacaaattcgagtcaatcgatcccatttctggtcattcaaacagtaatgataacaatggacaatttgtttctagtgtctgctggag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10315507 |
tgccaatggcttctcacaaattcgagtcaatcgatcccatttctggtcattcaaacagtaatgataacaatggacaatttgtttctagtgtctgctggag |
10315606 |
T |
|
| Q |
116 |
gaagaagtctaacatgcttgttgcagccaactcagttggaattgtgaaactacttcagatggtgtgacagatacattttatttggctcagaccagtgatt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10315607 |
gaagaagtctaacatgcttgttgcagccaactcagttggaattgtgaaactacttcagatggtgtgacagatacattttatttggctcagaccagtgatt |
10315706 |
T |
|
| Q |
216 |
tattcaggcttcaatgattaatgacgaataaagcttaaatggagaggagagggtatagagtttaaattgtttcaaagaggcgtgcaacaatgtctcttta |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10315707 |
tattcaggcttcaatgattaatgacgaataaagcttaaatggagaggagagggtatagagtttaaattgtttcaaagaggcgtgcaacaatgtctcttta |
10315806 |
T |
|
| Q |
316 |
gttttcatagataggtaatc-----------ttgttatctacaacatgacatgaagaacacnnnnnnnnncctaaaatatgaacaaaataagccgaacga |
404 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10315807 |
gttttcatagataggtaatcttgttaagattttgttatctacaacatgacatgaagaacac--tttttttcctaaaatatgaacaaaataagccgaacga |
10315904 |
T |
|
| Q |
405 |
gatatatatgaagcacatacatatatataggcttttgaagttaatcacaggt |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10315905 |
gatatatatgaagcacatacatatatataggcttttgaagttaatcacaggt |
10315956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University