View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14200_low_13 (Length: 459)
Name: NF14200_low_13
Description: NF14200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14200_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 7307481 - 7307939
Alignment:
| Q |
1 |
tgtaataaatgcaatttagactaggggtcggtgctaataaacttcttacaagttcgtatttatagaaataggaatatgaaaagaatcatgtaaaaactat |
100 |
Q |
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| T |
7307481 |
tgtaataaatgcaatttagactaggggtcggtgctaataaacttcttacaagttcgtatttatagaaataggaatatgaaaagaatcatgtaaaaactat |
7307580 |
T |
|
| Q |
101 |
gaggattctataaattgatgccaaacagattagaaatttgtttggaaactattggggacattgacaatgaagaagtaacttaagtagaccactaatctat |
200 |
Q |
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| T |
7307581 |
gaggattctataaattgatgccaaacagattagaaatttgtttggaaactattggggacattggcaatgaagaagtaacttaagtagaccactaatctat |
7307680 |
T |
|
| Q |
201 |
catttacattcattgcttcacaagttgtcattattttcatttgattcaaaagaaactgcaagatagctttgcttgttagtaaattgaatgttgtagtgca |
300 |
Q |
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| T |
7307681 |
catttacattcattgcttcacaagttgtcattattttcatttgattcaaaagaaactgcaagatagctttgcttgttagtaaattgaatgttgtagtgca |
7307780 |
T |
|
| Q |
301 |
atatcacatttttatttccctatgcag-------------tcttgcagtgcaatctagtctagtctagtaaacataagaaaaaacagaaatgacatttgg |
387 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7307781 |
atatcacatttttatttccctatgcagtcttgcagtgcaatcttgcagtgcaatctagtctagtctagtaaacataagaaaaaacagaaatgacatttgg |
7307880 |
T |
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| Q |
388 |
acaacaaaactgctgcccacaaccatacatatctaagttgttaatctcggatagctgtg |
446 |
Q |
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| T |
7307881 |
acaacaaaactgctgcccacaaccatacatatctaagttgttaatctcggatagctgtg |
7307939 |
T |
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