View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14200_low_18 (Length: 433)
Name: NF14200_low_18
Description: NF14200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14200_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 39894528 - 39894265
Alignment:
| Q |
1 |
aaatcagaataatattgacaaaagaggaatcctatgaaagattcttaatcctatgtatgttgcattgcattctttggatgctcagaaacaaatcaattcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39894528 |
aaatcagaataatattgacaaaagaggaatcctatgaaagattcttaatcatatgtatgttgcatt-----ctttggatgctcagaaacaaatcaattcc |
39894434 |
T |
|
| Q |
101 |
aacnnnnnnnnnnnnnnnnnnnnnnccaacctcagtaacaggaaattccacagtatgttttgatgctggtcttattgtgatctcagtaacagaatctgaa |
200 |
Q |
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||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39894433 |
aacaaaaaaacaaagaaaaaaaaaaccaacctcagtaacaggaaattccacagtatgctttgatgctggtcttattgtgatctcagtaacagaatctgaa |
39894334 |
T |
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| Q |
201 |
tttccaaattcactgtctttactcaatccaccatacttcacagggagttgctctggagctatgtagctg |
269 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39894333 |
tttccaaattcaccatctttactcaatccaccatacttcacagggagttgctctggagctatgtagctg |
39894265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 337 - 417
Target Start/End: Complemental strand, 39894197 - 39894117
Alignment:
| Q |
337 |
tttaatccttatatgttttcacctcaaaagggtctcagttgacttggaaggcccagcaaagacaaacttgcttttggttct |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39894197 |
tttaatccttatatgttttcacctcaaaagggtctcagttgacttggaaggcccagcaaagacaaacttgcttttggttct |
39894117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 418
Target Start/End: Complemental strand, 44642645 - 44642598
Alignment:
| Q |
371 |
tcagttgacttggaaggcccagcaaagacaaacttgcttttggttctt |
418 |
Q |
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|||| ||| ||||||||||||||||| |||||||||||||| |||||| |
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| T |
44642645 |
tcagctgatttggaaggcccagcaaaaacaaacttgctttttgttctt |
44642598 |
T |
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