View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14200_low_2 (Length: 766)
Name: NF14200_low_2
Description: NF14200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14200_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 180; Significance: 8e-97; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 550 - 750
Target Start/End: Complemental strand, 42395679 - 42395479
Alignment:
| Q |
550 |
taacaattctctaataatcaatannnnnnnaggatcttaaatttttgtgtttaatcaagtatatataaattcattgcagtaaaactaggtcctaaactat |
649 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42395679 |
taacaattctctaataatcaatatttttttaggatcttaaatttttgtgtttaatcaagtatatataaattcattgcagtaaaactaggtcctaaactat |
42395580 |
T |
|
| Q |
650 |
cagagactctgaagggtaagttgagtttgggtgcaaggataatacaagaaggtgggagagggaacattttcaagaatatttttggtatgcaagaaggaga |
749 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42395579 |
cagagactctgaagggtaagttgagtttgggtgcaaggataatacaagaaggtgggagagggaacattttcaagaatatttttggtatgcaagaaggaga |
42395480 |
T |
|
| Q |
750 |
g |
750 |
Q |
| |
|
| |
|
|
| T |
42395479 |
g |
42395479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 142 - 321
Target Start/End: Complemental strand, 42396053 - 42395880
Alignment:
| Q |
142 |
tttcatttcattggacggacagctagctgtttgcaagaatatactactagcaaataaataaatatattcatatacaaattcataaatcagattccagaaa |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42396053 |
tttcatttcattggacggacagctagctgtttgcaagaatata--actagc----aaataaatatattcatatacaaattcataaatcagattccagaaa |
42395960 |
T |
|
| Q |
242 |
taagaaatttccatccactgatgaattcttctacgggtaataacatatactcttcttctcatacacagccttcaattaat |
321 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42395959 |
taagaaatttccttccactgatgaattcttctacgggtaataacatatactcttcttctcatacacaaccttcaattaat |
42395880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 363 - 549
Target Start/End: Complemental strand, 42395878 - 42395703
Alignment:
| Q |
363 |
tggttcttcttgtaactgcagccaaagaaactactgcaactgctaaaatggagctcaagaaagcaacaaccaggaaaaacacaagttttgcatgtaggat |
462 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
42395878 |
tggttcttcttttaactgcagccaaagaaactactgcaactgctaaaatggagcacaagaaagcaacaaccaggaaaaacacaagttttgcatgtagggt |
42395779 |
T |
|
| Q |
463 |
tcatgaacatggtaagtcacctctctaaatatttacctcacattagtgttagattagttatgtgttcgttggtctacttggatctat |
549 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
42395778 |
tcatcaacatggtaagtcacctctctaaatatttacctcacat-----------tagttatgtgttcgttggtctacttggatctat |
42395703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 42396163 - 42396082
Alignment:
| Q |
1 |
attaaatttgtccttttatggagggaagattcttacaagttacnnnnnnnngcgcgtggaatgaatgaattatatttggaaaaacc |
86 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
42396163 |
attaaatttgtctttttatggagggaagattcttacaagttacaaaaaaaagcgcgtg----gaatgaattatatttggaaaaacc |
42396082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 622 - 743
Target Start/End: Original strand, 29295916 - 29296037
Alignment:
| Q |
622 |
attgcagtaaaactaggtcctaaactatcagagactctgaagggtaagttgagtttgggtgcaaggataatacaagaaggtgggagagggaacattttca |
721 |
Q |
| |
|
|||||||| ||| ||||||||||| | || |||||| ||||||||||||| ||||| ||||| | || || ||||||||||| ||||| |||||||||| |
|
|
| T |
29295916 |
attgcagtgaaattaggtcctaaattttctgagactttgaagggtaagttaagtttaggtgccaaaattattcaagaaggtggaagaggtaacattttca |
29296015 |
T |
|
| Q |
722 |
agaatatttttggtatgcaaga |
743 |
Q |
| |
|
|| |||||||||| |||||||| |
|
|
| T |
29296016 |
agcatatttttgggatgcaaga |
29296037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University