View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14200_low_24 (Length: 368)
Name: NF14200_low_24
Description: NF14200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14200_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 122 - 280
Target Start/End: Original strand, 37711405 - 37711563
Alignment:
| Q |
122 |
gtatttaatcaaatcaggttgtatagatttttgtcaagatattttggaaactatgttataaaagtggcattgtaaagcaatttgattagatgattagatg |
221 |
Q |
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| T |
37711405 |
gtatttaatcaaatcaggttgtatagatttttgtcaagatattttggaaactatgttataaaagtggcattgtaaagcaatttgattagatgattagatg |
37711504 |
T |
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| Q |
222 |
catgtgtaaaaatgttttacgtaagtgcaatatttgtccctctatttataaaaaatgaa |
280 |
Q |
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| T |
37711505 |
catgtgtaaaaatgttttacgtaagtgcaatatttttccctctatttataaaaaatgaa |
37711563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 37710418 - 37710534
Alignment:
| Q |
18 |
cacgttgcccttatattctcctcaactggtgtttcccttctgtccttttcatcattannnnnnnagtttaattgttatgcgtcg---gttaaaacttttt |
114 |
Q |
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| T |
37710418 |
cacgttgcccttatattctcctcaactggtgtttcccttctgtccttttcatcattatttttttagtttaattgttatgcgtcgaccgttaaaacttttt |
37710517 |
T |
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| Q |
115 |
tacatatgtatttaatc |
131 |
Q |
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| T |
37710518 |
tacatatgtatttaatc |
37710534 |
T |
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