View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14200_low_27 (Length: 353)

Name: NF14200_low_27
Description: NF14200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14200_low_27
NF14200_low_27
[»] chr2 (13 HSPs)
chr2 (14-343)||(8403797-8404123)
chr2 (284-333)||(8368134-8368183)
chr2 (284-333)||(8401227-8401276)
chr2 (284-333)||(8422804-8422853)
chr2 (281-338)||(8459649-8459706)
chr2 (295-338)||(8411878-8411921)
chr2 (295-338)||(8433976-8434019)
chr2 (296-338)||(8416959-8417001)
chr2 (297-338)||(8376087-8376128)
chr2 (297-338)||(8431029-8431070)
chr2 (117-153)||(8368314-8368350)
chr2 (117-153)||(8401060-8401096)
chr2 (117-153)||(8422637-8422673)
[»] chr4 (1 HSPs)
chr4 (304-338)||(55336117-55336151)


Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 14 - 343
Target Start/End: Complemental strand, 8404123 - 8403797
Alignment:
Q  14 aagaatattactggattgaacaataagatggagattaataatgagagcaataatgggtggaatttggaattggaagatgaaatgaatgaggtaattgaag 113  Q
    ||||| || ||| ||| ||||| ||||||||||||||||   ||| | |||||||| ||||||||||| |||||| |||||||||| |||||||||||||    
T  8404123 aagaaaatgactagatagaacagtaagatggagattaat---gaggggaataatggatggaatttggagttggaaaatgaaatgaaggaggtaattgaag 8404027  T
Q  114 tggtgaagagaaaagatattgaggattatgagagattagggaatattgcatcaaagattaacaagggtttagcaatttttggacctttgttaacaggaat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  8404026 tggtgaagagaaaagatattgaggattatgagagattagggaatattgcattaaagattaacaagagtttagcaattttaggacctttgttaacaggaat 8403927  T
Q  214 tgcagctataggatcatcatttgtaggtgatgaaatgttggtaaattttgttcctgctttttccggtgctttggcaactgttgttaatacttttgagcat 313  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8403926 tgcagctatagggtcatcatttgtaggtgatgaaatgttggtaaattttgttcctgctttttccggtgctttggcaactgttgttaatacttttgagcat 8403827  T
Q  314 ggaggacaagttggtatggtgtttgtgatg 343  Q
    ||||||||||||||||||||||||| ||||    
T  8403826 ggaggacaagttggtatggtgtttgagatg 8403797  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 8368183 - 8368134
Alignment:
Q  284 ttggcaactgttgttaatacttttgagcatggaggacaagttggtatggt 333  Q
    ||||| |||| ||||||| ||||||||||||| |||||||||||||||||    
T  8368183 ttggctactgctgttaattcttttgagcatggtggacaagttggtatggt 8368134  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 333
Target Start/End: Original strand, 8401227 - 8401276
Alignment:
Q  284 ttggcaactgttgttaatacttttgagcatggaggacaagttggtatggt 333  Q
    ||||| |||| ||||||| ||||||||||||| |||||||||||||||||    
T  8401227 ttggctactgctgttaattcttttgagcatggtggacaagttggtatggt 8401276  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 333
Target Start/End: Original strand, 8422804 - 8422853
Alignment:
Q  284 ttggcaactgttgttaatacttttgagcatggaggacaagttggtatggt 333  Q
    ||||| |||| ||||||| ||||||||||||| |||||||||||||||||    
T  8422804 ttggctactgctgttaattcttttgagcatggtggacaagttggtatggt 8422853  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 338
Target Start/End: Original strand, 8459649 - 8459706
Alignment:
Q  281 gctttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttg 338  Q
    |||||||||||||||||||| || || || |||||||| |||||||||||||| ||||    
T  8459649 gctttggcaactgttgttaacacattagaacatggagggcaagttggtatggtttttg 8459706  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 338
Target Start/End: Complemental strand, 8411921 - 8411878
Alignment:
Q  295 tgttaatacttttgagcatggaggacaagttggtatggtgtttg 338  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||    
T  8411921 tgttaatacttttgagcatggtggacaagttggcatggtttttg 8411878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 338
Target Start/End: Complemental strand, 8434019 - 8433976
Alignment:
Q  295 tgttaatacttttgagcatggaggacaagttggtatggtgtttg 338  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||    
T  8434019 tgttaatacttttgagcatggtggacaagttggcatggtttttg 8433976  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 338
Target Start/End: Complemental strand, 8417001 - 8416959
Alignment:
Q  296 gttaatacttttgagcatggaggacaagttggtatggtgtttg 338  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||    
T  8417001 gttaatacttttgagcatggtggacaagttggcatggtttttg 8416959  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 8376087 - 8376128
Alignment:
Q  297 ttaatacttttgagcatggaggacaagttggtatggtgtttg 338  Q
    ||||||||||||||||||| ||||||||||| ||||| ||||    
T  8376087 ttaatacttttgagcatggtggacaagttggcatggtttttg 8376128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 8431070 - 8431029
Alignment:
Q  297 ttaatacttttgagcatggaggacaagttggtatggtgtttg 338  Q
    ||||||||||||||||||| ||||||||||| ||||| ||||    
T  8431070 ttaatacttttgagcatggtggacaagttggcatggtttttg 8431029  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 8368350 - 8368314
Alignment:
Q  117 tgaagagaaaagatattgaggattatgagagattagg 153  Q
    |||||||||||||||| || |||||||||||||||||    
T  8368350 tgaagagaaaagatatggaagattatgagagattagg 8368314  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 8401060 - 8401096
Alignment:
Q  117 tgaagagaaaagatattgaggattatgagagattagg 153  Q
    |||||||||||||||| || |||||||||||||||||    
T  8401060 tgaagagaaaagatatggaagattatgagagattagg 8401096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 8422637 - 8422673
Alignment:
Q  117 tgaagagaaaagatattgaggattatgagagattagg 153  Q
    |||||||||||||||| || |||||||||||||||||    
T  8422637 tgaagagaaaagatatggaagattatgagagattagg 8422673  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 338
Target Start/End: Complemental strand, 55336151 - 55336117
Alignment:
Q  304 ttttgagcatggaggacaagttggtatggtgtttg 338  Q
    |||||||||||| ||||||||||||||||||||||    
T  55336151 ttttgagcatggtggacaagttggtatggtgtttg 55336117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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