View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14200_low_28 (Length: 352)
Name: NF14200_low_28
Description: NF14200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14200_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 2559402 - 2559743
Alignment:
| Q |
1 |
catagtacggtgaatttggagaacagtaacaatgccggaatatttaattttagaagtttggggttacgaaggttggtaaaaaatgaatgaagcttgtcta |
100 |
Q |
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|||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2559402 |
catagtgcagtgaatttggagaacagtaacaatgccgaaatatttaattttagaagtttggggttacgaaggttggtaaaaaatgaatgaagcttgtcta |
2559501 |
T |
|
| Q |
101 |
atgaaactcggttgggctatttgcagaggtggtaat---ttatgatatgaagtgttgaggggaaagtttgcgcgagatgagtttcatgttgatcgtatgg |
197 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2559502 |
atgaaactcggttgggctatttgcagaggtggtaataagttatgatatgaagtgttgaggggaaagtttgcgcgagatgagtttcatgttgatcgtatgg |
2559601 |
T |
|
| Q |
198 |
ttgcgaaagcaaatgattccagtgttttgaaacatttggcacgattgtggcctacatttgggttgtagagaatgacaggaacattgcagcttgggatcat |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2559602 |
ttgcgaaagcaaatgattccagtgttttgaaacatttggcacgattgtggcctacatttgggttgtagagaatgacacgaacattgcagcttgggatcat |
2559701 |
T |
|
| Q |
298 |
tgttggattggacatgacattgatataagagacattattgat |
339 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
2559702 |
tgttggattggacatgacattgatataagagacattattgat |
2559743 |
T |
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