View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14200_low_29 (Length: 347)
Name: NF14200_low_29
Description: NF14200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14200_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 52379579 - 52379250
Alignment:
| Q |
18 |
caaatcccactgccaacatacaggggaggtgctggtatcaatatcaccaatggaaggcaatttggcaatgagcaaaggtaattatgcaatcaatttcatt |
117 |
Q |
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| T |
52379579 |
caaatcccactgccaacatacaggggaggtgctggtatcaatatcaccaatggaaggcaatttggcaatgagcaaaggtaattatgcaatcaatttcatt |
52379480 |
T |
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| Q |
118 |
ctaaagccatcatcttaaaaaatccatgcagtgcataatgttggttaagttttcatgacaagtgctaatattttgtagttgctacaacatatatgatgaa |
217 |
Q |
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| T |
52379479 |
gtaaagctatcatctta-aaaatccatgcagtacataatgttggttaagttttcatgacaagtgctaatattttgtagttgctacaacatat---atgaa |
52379384 |
T |
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| Q |
218 |
tttagttcttcttttcttatcagttttattacattttaaattaaaccaagaaaatttaatattacttatcaga-------------ttcattgcaagtat |
304 |
Q |
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| T |
52379383 |
tttagttcttcttttcttatcagttttattacattttaaattaaaccaagaaaatttaatattacttatcagataagaagatggttttcattgcaagtat |
52379284 |
T |
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| Q |
305 |
aaaggccccttataggtgctttcaaaagaataat |
338 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
52379283 |
aaaggccccttataggtgctttcaaaagaataat |
52379250 |
T |
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