View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14200_low_30 (Length: 323)
Name: NF14200_low_30
Description: NF14200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14200_low_30 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 6 - 310
Target Start/End: Original strand, 974395 - 974699
Alignment:
| Q |
6 |
aatactacatagcttcacaagtgttacatacatgaaacacaaattctctatacacaaactggaccttcacatcttgcattttcatataccaaaaattaaa |
105 |
Q |
| |
|
||||||||||| || |||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
974395 |
aatactacataaatttacaagtgttacataaaagaaacataaattctctatacacaaactggaccttcacatcttgcattttcatataccaaaaattaaa |
974494 |
T |
|
| Q |
106 |
gatggaagcaatcgtcatatacaaactgtggccaccattatttgttaaggagaaaacagaatcaacagcagatcaattcctgccgggatgcacgccgaca |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
974495 |
gatggaagcaatcgtcatatacaaactgtggccaccattatttgttaaggagaaaacagaatcaacagcagatcaattcctgccgggatgcacgccgaca |
974594 |
T |
|
| Q |
206 |
gacttcaatgtctcagcggttcgaggactgcaacaaaccacattcataaattagtatctctaacaattaatctctaaatatttgagtaacgatattgttt |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
974595 |
gacttcaatgtctcagcggttcgaggactgcaacaaaccacattcataaattagtatctctaacaattaatctctaaatatttgagtaacgatatcgttt |
974694 |
T |
|
| Q |
306 |
ttatt |
310 |
Q |
| |
|
||||| |
|
|
| T |
974695 |
ttatt |
974699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University