View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14200_low_33 (Length: 312)
Name: NF14200_low_33
Description: NF14200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14200_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 294
Target Start/End: Complemental strand, 29223591 - 29223313
Alignment:
| Q |
16 |
atagtgtcgtatttgtgagtttttaaaggatggttggagtagttgtctatgtcttcaaccattttgagaatagcatacgttgggtcagtccgacgctgaa |
115 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29223591 |
atagtgtcgtttttgtgagtttttaaaggatggttggagtagttgtctatgtcttcaaccattttgagaatagcatacgttgggtcagtccgacgctgaa |
29223492 |
T |
|
| Q |
116 |
aatcatcctcaaaaatagtttagcatacgttaggtcaatccgacgccgaaaatcatcctcaaaaataattttattcctccacatccatatgcgccagcaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29223491 |
aatcatcctcaaaaatagtttagcatacgttgggtcaatccgacgccgaaaatcatcctcaaaaataattttgttcctccacatccatatgcgccagcaa |
29223392 |
T |
|
| Q |
216 |
ataacaaataatagatatatttgagcataacctttgnnnnnnnnncttctaccaaaataatattgaaatactttactac |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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|
| T |
29223391 |
ataacaaataatagatatatttgagcataacctttgttttttttttttcttccaaaataatattgaaatactttactac |
29223313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 25662289 - 25662169
Alignment:
| Q |
16 |
atagtgtcgtatttgtgagtttttaaaggatggttggagtagttgtctatgtcttcaaccattttgagaatagcatacgttgggtcagtccgacgctgaa |
115 |
Q |
| |
|
||||| |||| || ||||||||| | |||||||| ||||||||| || |||||||||||||||||| ||||||||||| ||||||||||| |||| ||| |
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|
| T |
25662289 |
atagtatcgtgttggtgagttttcacaggatggtgggagtagttatcaatgtcttcaaccattttgggaatagcatacattgggtcagtcggacgacgaa |
25662190 |
T |
|
| Q |
116 |
aatcatcctcaaaaatagttt |
136 |
Q |
| |
|
||||||||| ||||| ||||| |
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|
| T |
25662189 |
aatcatcctaaaaaacagttt |
25662169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 25668694 - 25668574
Alignment:
| Q |
16 |
atagtgtcgtatttgtgagtttttaaaggatggttggagtagttgtctatgtcttcaaccattttgagaatagcatacgttgggtcagtccgacgctgaa |
115 |
Q |
| |
|
||||| |||| || ||||||||| | |||||||| ||||||||| || |||||||||||||||||| ||||||||||| ||||||||||| |||| ||| |
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|
| T |
25668694 |
atagtatcgtgttggtgagttttcacaggatggtgggagtagttatcaatgtcttcaaccattttgggaatagcatacattgggtcagtcggacgacgaa |
25668595 |
T |
|
| Q |
116 |
aatcatcctcaaaaatagttt |
136 |
Q |
| |
|
||||||||| ||||| ||||| |
|
|
| T |
25668594 |
aatcatcctaaaaaacagttt |
25668574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 25675099 - 25674979
Alignment:
| Q |
16 |
atagtgtcgtatttgtgagtttttaaaggatggttggagtagttgtctatgtcttcaaccattttgagaatagcatacgttgggtcagtccgacgctgaa |
115 |
Q |
| |
|
||||| |||| || ||||||||| | |||||||| ||||||||| || |||||||||||||||||| ||||||||||| ||||||||||| |||| ||| |
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|
| T |
25675099 |
atagtatcgtgttggtgagttttcacaggatggtgggagtagttatcaatgtcttcaaccattttgggaatagcatacattgggtcagtcggacgacgaa |
25675000 |
T |
|
| Q |
116 |
aatcatcctcaaaaatagttt |
136 |
Q |
| |
|
||||||||| ||||| ||||| |
|
|
| T |
25674999 |
aatcatcctaaaaaacagttt |
25674979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 25681773 - 25681653
Alignment:
| Q |
16 |
atagtgtcgtatttgtgagtttttaaaggatggttggagtagttgtctatgtcttcaaccattttgagaatagcatacgttgggtcagtccgacgctgaa |
115 |
Q |
| |
|
||||| |||| || ||||||||| | |||||||| ||||||||| || |||||||||||||||||| ||||||||||| ||||||||||| |||| ||| |
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|
| T |
25681773 |
atagtatcgtgttggtgagttttcacaggatggtgggagtagttatcaatgtcttcaaccattttgggaatagcatacattgggtcagtcggacgacgaa |
25681674 |
T |
|
| Q |
116 |
aatcatcctcaaaaatagttt |
136 |
Q |
| |
|
||||||||| ||||| ||||| |
|
|
| T |
25681673 |
aatcatcctaaaaaacagttt |
25681653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 25690077 - 25689957
Alignment:
| Q |
16 |
atagtgtcgtatttgtgagtttttaaaggatggttggagtagttgtctatgtcttcaaccattttgagaatagcatacgttgggtcagtccgacgctgaa |
115 |
Q |
| |
|
||||| |||| || ||||||||| | |||||||| ||||||||| || |||||||||||||||||| ||||||||||| ||||||||||| |||| ||| |
|
|
| T |
25690077 |
atagtatcgtgttggtgagttttcacaggatggtgggagtagttatcaatgtcttcaaccattttgggaatagcatacattgggtcagtcggacgacgaa |
25689978 |
T |
|
| Q |
116 |
aatcatcctcaaaaatagttt |
136 |
Q |
| |
|
||||||||| ||||| ||||| |
|
|
| T |
25689977 |
aatcatcctaaaaaacagttt |
25689957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 29173691 - 29173736
Alignment:
| Q |
157 |
gacgccgaaaatcatcctcaaaaataattttattcctccacatcca |
202 |
Q |
| |
|
||||| |||||||||| ||||||||| |||| |||||||||||||| |
|
|
| T |
29173691 |
gacgctgaaaatcatcttcaaaaatagttttgttcctccacatcca |
29173736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 38557227 - 38557115
Alignment:
| Q |
16 |
atagtgtcgtatttgtgagtttttaaaggatggttggagtagttgtctatgtcttcaaccattttgagaatagcatacgttgggtcagtccgacgctgaa |
115 |
Q |
| |
|
||||||||||||| |||| |||| |||||||||||| |||| ||| ||||| |||| |||||| || ||||| ||| ||||||||| || || | |||| |
|
|
| T |
38557227 |
atagtgtcgtattggtgatttttcaaaggatggttgatgtagctgtatatgttttcagccatttagaaaatagaataagttgggtcaatcggatgttgaa |
38557128 |
T |
|
| Q |
116 |
aatcatcctcaaa |
128 |
Q |
| |
|
||||||||||||| |
|
|
| T |
38557127 |
aatcatcctcaaa |
38557115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 38557130 - 38557082
Alignment:
| Q |
163 |
gaaaatcatcctcaaaaataattttattcctccacatccatatgcgcca |
211 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||| ||||| ||| |||| |
|
|
| T |
38557130 |
gaaaatcatcctcaaatataattttatttctccatatccacatgtgcca |
38557082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 29350115 - 29350068
Alignment:
| Q |
41 |
aaggatggttggagtagttgtctatgtcttcaaccattttgagaatag |
88 |
Q |
| |
|
|||||||||||| |||||||||||||| ||| ||||| |||||||||| |
|
|
| T |
29350115 |
aaggatggttggtgtagttgtctatgtattccaccatcttgagaatag |
29350068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 42055383 - 42055455
Alignment:
| Q |
16 |
atagtgtcgtatttgtgagtttttaaaggatggttggagtagttgtctatgtcttcaaccattttgagaatag |
88 |
Q |
| |
|
||||| ||||||| |||||||| |||||||| | || |||||| || ||| ||| ||||||||||||||||| |
|
|
| T |
42055383 |
atagtttcgtattgatgagttttcaaaggatgatgggtgtagttctcaatgacttgaaccattttgagaatag |
42055455 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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